View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_21 (Length: 237)
Name: NF19092_low_21
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 1548294 - 1548093
Alignment:
| Q |
20 |
gagaagaatatatcacaccacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatcta |
119 |
Q |
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| T |
1548294 |
gagaagaatatatcacaccacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatcta |
1548195 |
T |
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| Q |
120 |
aagaaagtttttaaactggaaagtcaattatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagta |
219 |
Q |
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| T |
1548194 |
aagaaagtttttaaactggaaagtcaattatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagcttatagagta |
1548095 |
T |
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| Q |
220 |
ta |
221 |
Q |
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|| |
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| T |
1548094 |
ta |
1548093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 1544441 - 1544232
Alignment:
| Q |
20 |
gagaagaatatatcacaccacagacgtaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaacgcaagatgaatcatgatcaatcta |
119 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | |
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| T |
1544441 |
gagaagaatatatcacatcacagacctaacatccttgagctaccaacgcagaaacaacacatgaaatggatgcaatgcaagatgaatcat-atcaatcca |
1544343 |
T |
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| Q |
120 |
aagaaagtttttaaac--------tggaaagtcaa-ttatgaagattattagacacaccaattgtaggaatagtagatacaacttttccaatttgaagct |
210 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1544342 |
aagaaagtttttaaacaataaaattggaaagtcaatttatgaagattattagacacaccaacagtaggaatagtagatacaacttttccaatttgaagct |
1544243 |
T |
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| Q |
211 |
tatagagtata |
221 |
Q |
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||||||||||| |
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| T |
1544242 |
tatagagtata |
1544232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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