View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_22 (Length: 237)
Name: NF19092_low_22
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_22 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: scaffold0620 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 1396 - 1626
Alignment:
| Q |
2 |
ttgaaccagaattgaacagatagtcagtgaggacacaaatcaacatgatactatcttttaannnnnnnn-ataagcaagaaattttattaaatgggagca |
100 |
Q |
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| T |
1396 |
ttgaaccagaattgaacagatagtcactgaggacacaaatcaacatgatactatcttttaatttttttttataagcaataaattttataaaatgggagca |
1495 |
T |
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| Q |
101 |
caaaaggtactctatctcattaaaacatctagtgtttaacacttaacatgaaatacaaagtaatgggcatgagtacctttgtaatgtaggaaacacatga |
200 |
Q |
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| T |
1496 |
caaaaggtactctatctcattaaaacatccggtgtttaacacttaacatgaaatacaaagtaatgggcatgaatacctttgtaatgtaggaaacacatga |
1595 |
T |
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| Q |
201 |
acaaagtccacaacaaagttttgatgatgtc |
231 |
Q |
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| T |
1596 |
acaaagtccacaacaaagttttgatgatgtc |
1626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 34087943 - 34088173
Alignment:
| Q |
2 |
ttgaaccagaattgaacagatagtcagtgaggacacaaatcaacatgatactatcttttaannnnnnnn-ataagcaagaaattttattaaatgggagca |
100 |
Q |
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| T |
34087943 |
ttgaaccagaattgaacagatagtcactgaggacacaaatcaacatgatactatcttttaatttttttttataagcaataaattttataaaatgggagca |
34088042 |
T |
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| Q |
101 |
caaaaggtactctatctcattaaaacatctagtgtttaacacttaacatgaaatacaaagtaatgggcatgagtacctttgtaatgtaggaaacacatga |
200 |
Q |
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| T |
34088043 |
caaaaggtactctatctcattaaaacatccggtgtttaacacttaacatgaaatacaaagtaatgggcatgaatacctttgtaatgtaggaaacacatga |
34088142 |
T |
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| Q |
201 |
acaaagtccacaacaaagttttgatgatgtc |
231 |
Q |
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| T |
34088143 |
acaaagtccacaacaaagttttgatgatgtc |
34088173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 34095372 - 34095433
Alignment:
| Q |
100 |
acaaaaggtactctatctcattaaaacatctagtgtttaacacttaacatgaaatacaaagt |
161 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34095372 |
acaagaggtactctattccattaaaacatatagtgtttaacacttaacatgaaatacaaagt |
34095433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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