View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19092_low_25 (Length: 221)
Name: NF19092_low_25
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_25 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 17110693 - 17110488
Alignment:
| Q |
14 |
atatcattcatgtttaataacaaaacacattacctttatattgtacacgttttgacgatgcaagaaaccaagttccagaatcctgatagctccataccca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110693 |
atatcattcatgtttaataacaaaacacattacctttatattgtacactttttgacaatgcaagaaaccaagttccagaatcctgatagctccataccca |
17110594 |
T |
|
| Q |
114 |
tccctagcaatacgagtgatattcaacgttaaatgaatatttgaaaatattaaacttttgtgttacgataagtagagatcagcaaacacagatcagatag |
213 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110593 |
tccctagcaatacgagtgaaattcaaggttaaatgaatatttgaaaatattaaac--ttgtgttacgataagtagagatcagcaaacacagatcagatag |
17110496 |
T |
|
| Q |
214 |
tgttagaa |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
17110495 |
tgttagaa |
17110488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 16980212 - 16980058
Alignment:
| Q |
14 |
atatcattcatgtttaataacaaaacacattacctttatattgtacacgttttg--acgatgcaagaaaccaagttccagaatcctgatagctccatacc |
111 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||| |||||||| ||| | |||| | ||| |||||| |||||| ||||||| |||||||| ||||| |
|
|
| T |
16980212 |
atatcattcatgattaataataaaacaaattatctttatatagtatatttttttttagtatgtaagaaattaagttctagaatccagatagctcaatacc |
16980113 |
T |
|
| Q |
112 |
catccctagcaatacgagtgatattcaacgttaaatgaatatttgaaaatattaa |
166 |
Q |
| |
|
|||| ||||| ||| | ||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
16980112 |
catcactagctgtacaaatgaaattcaaagttaaatcaatatttgaaaatattaa |
16980058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 17032084 - 17031930
Alignment:
| Q |
14 |
atatcattcatgtttaataacaaaacacattacctttatattgtacacgttttg--acgatgcaagaaaccaagttccagaatcctgatagctccatacc |
111 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||| |||||||| ||| | |||| | ||| |||||| |||||| ||||||| |||||||| ||||| |
|
|
| T |
17032084 |
atatcattcatgattaataataaaacaaattatctttatatagtatatttttttttagtatgtaagaaattaagttctagaatccagatagctcaatacc |
17031985 |
T |
|
| Q |
112 |
catccctagcaatacgagtgatattcaacgttaaatgaatatttgaaaatattaa |
166 |
Q |
| |
|
|||| ||||| ||| | ||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
17031984 |
catcactagctgtacaaatgaaattcaaagttaaatcaatatttgaaaatattaa |
17031930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 17050352 - 17050269
Alignment:
| Q |
83 |
aagttccagaatcctgatagctccatacccatccctagcaatacgagtgatattcaacgttaaatgaatatttgaaaatattaa |
166 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||| ||||| ||| | ||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
17050352 |
aagttctagaatccagatagctcaatacccatcactagctgtacaaatgaaattcaaagttaaatcaatatttgaaaatattaa |
17050269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University