View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19092_low_27 (Length: 218)

Name: NF19092_low_27
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19092_low_27
NF19092_low_27
[»] chr2 (9 HSPs)
chr2 (1-82)||(6995142-6995223)
chr2 (138-184)||(2249579-2249625)
chr2 (139-184)||(6750120-6750165)
chr2 (139-184)||(13616077-13616122)
chr2 (139-184)||(38527173-38527218)
chr2 (139-175)||(1021193-1021229)
chr2 (139-175)||(1115161-1115197)
chr2 (139-175)||(28745617-28745653)
chr2 (139-175)||(36436305-36436341)
[»] chr1 (7 HSPs)
chr1 (63-138)||(3267233-3267308)
chr1 (138-184)||(16693062-16693108)
chr1 (139-184)||(6849752-6849797)
chr1 (139-184)||(8530082-8530127)
chr1 (139-184)||(17285407-17285452)
chr1 (138-174)||(29169940-29169976)
chr1 (139-175)||(29981829-29981865)
[»] chr5 (7 HSPs)
chr5 (138-173)||(20656982-20657017)
chr5 (138-184)||(3631257-3631303)
chr5 (139-184)||(9737820-9737865)
chr5 (139-184)||(13013368-13013413)
chr5 (139-184)||(26525343-26525388)
chr5 (139-175)||(8074362-8074398)
chr5 (139-175)||(25701543-25701579)
[»] chr3 (9 HSPs)
chr3 (137-184)||(7160405-7160452)
chr3 (139-182)||(25246343-25246386)
chr3 (138-184)||(18163716-18163762)
chr3 (138-176)||(28952514-28952552)
chr3 (139-177)||(36633486-36633524)
chr3 (139-184)||(29126158-29126203)
chr3 (139-184)||(50527748-50527793)
chr3 (139-184)||(52571539-52571584)
chr3 (142-174)||(32271042-32271074)
[»] chr8 (7 HSPs)
chr8 (140-184)||(6316877-6316921)
chr8 (139-184)||(9830607-9830652)
chr8 (139-184)||(11635758-11635803)
chr8 (139-184)||(34934370-34934415)
chr8 (139-175)||(7012337-7012373)
chr8 (139-175)||(24797177-24797213)
chr8 (139-175)||(41838078-41838114)
[»] chr7 (5 HSPs)
chr7 (137-184)||(44724177-44724224)
chr7 (139-184)||(26873702-26873747)
chr7 (142-175)||(44468144-44468177)
chr7 (139-175)||(36358433-36358469)
chr7 (139-175)||(36675610-36675646)
[»] chr4 (11 HSPs)
chr4 (1-60)||(49085659-49085718)
chr4 (138-184)||(36584422-36584468)
chr4 (138-184)||(40228545-40228591)
chr4 (139-184)||(6755828-6755873)
chr4 (139-184)||(13233229-13233274)
chr4 (138-175)||(18491185-18491222)
chr4 (139-184)||(44817663-44817708)
chr4 (139-184)||(51001475-51001520)
chr4 (139-175)||(11651089-11651125)
chr4 (139-175)||(19653767-19653803)
chr4 (139-175)||(44134493-44134529)
[»] scaffold0014 (1 HSPs)
scaffold0014 (139-184)||(64933-64978)
[»] chr6 (3 HSPs)
chr6 (139-184)||(2660952-2660997)
chr6 (138-175)||(26468447-26468484)
chr6 (139-175)||(12698493-12698529)
[»] scaffold0131 (1 HSPs)
scaffold0131 (139-175)||(11166-11202)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 6995223 - 6995142
Alignment:
Q  1 aggttttcagaaaggcacttatgcaatcacttcaagaggatgaagaaaaacctgtaagttgttattagtatttttcattttt 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6995223 aggttttcagaaaggcacttatgcaatcacttcaagaggatgaagaaaaacctgtaagttgttattagtatttttcattttt 6995142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 2249579 - 2249625
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  2249579 gcagtggcggagcccttcatgggctggggtgggccacgacccacccg 2249625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 6750165 - 6750120
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  6750165 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 6750120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 13616122 - 13616077
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||| ||||||| ||||||||||||||||| | ||||||    
T  13616122 cagtggcggagtctttcatgggctggggtgggccacggcccacccg 13616077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 38527173 - 38527218
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  38527173 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 38527218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 1021229 - 1021193
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  1021229 cagtggcggagcccttcatgggctggggtgggccacg 1021193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 1115197 - 1115161
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  1115197 cagtggcggagcccttcatgggctggggtgggccacg 1115161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 28745653 - 28745617
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  28745653 cagtggcggagcccttcatgggctggggtgggccacg 28745617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 36436341 - 36436305
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  36436341 cagtggcggagcccttcatgggctggggtgggccacg 36436305  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 3267308 - 3267233
Alignment:
Q  63 tattagtatttttcatttttgtatgatgaataatggttggggaaattatattttggtgctccgtgtgggggatgtg 138  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3267308 tattagtcattttcacttttgtatgatgaataatggttggggaaattatattttggtgctccgtgtgggggatgtg 3267233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 16693108 - 16693062
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    |||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  16693108 gcagtggcggagcccttcatgggctggggtgggccacggcccacccg 16693062  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 6849752 - 6849797
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  6849752 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 6849797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 8530082 - 8530127
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  8530082 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 8530127  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 17285452 - 17285407
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  17285452 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 17285407  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 29169940 - 29169976
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccac 174  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  29169940 gcagtggcggagcccttcatgggctggggtgggccac 29169976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 29981865 - 29981829
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  29981865 cagtggcggagcccttcatgggctggggtgggccacg 29981829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 20657017 - 20656982
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggcca 173  Q
    ||||||||||||||||||||||||||||||||||||    
T  20657017 gcagtggcggagcctttcataggctggggtgggcca 20656982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 3631257 - 3631303
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    |||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  3631257 gcagtggcggagcccttcatgggctggggtgggccacggcccacccg 3631303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 9737865 - 9737820
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  9737865 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 9737820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 13013413 - 13013368
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  13013413 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 13013368  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 26525388 - 26525343
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  26525388 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 26525343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 8074398 - 8074362
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  8074398 cagtggcggagcccttcatgggctggggtgggccacg 8074362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 25701579 - 25701543
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  25701579 cagtggcggagcccttcatgggctggggtgggccacg 25701543  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 7160452 - 7160405
Alignment:
Q  137 tgcagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||||||||||| ||||||||||||||||| | ||||||    
T  7160452 tgcagtggcggagcctttcatgggctggggtgggccacggcccacccg 7160405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 25246386 - 25246343
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacc 182  Q
    |||||||||||||||||||  |||||||||||||||||| ||||    
T  25246386 cagtggcggagcctttcatgagctggggtgggccacgacccacc 25246343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 18163716 - 18163762
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    |||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  18163716 gcagtggcggagcccttcatgggctggggtgggccacggcccacccg 18163762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 28952552 - 28952514
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacga 176  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  28952552 gcagtggcggagcccttcatgggctggggtgggccacga 28952514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 36633486 - 36633524
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgac 177  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  36633486 cagtggcggagcccttcatgggctggggtgggccacgac 36633524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 29126203 - 29126158
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  29126203 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 29126158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 50527793 - 50527748
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  50527793 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 50527748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 52571584 - 52571539
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  52571584 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 52571539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 32271074 - 32271042
Alignment:
Q  142 tggcggagcctttcataggctggggtgggccac 174  Q
    |||||||||||||||| ||||||||||||||||    
T  32271074 tggcggagcctttcatgggctggggtgggccac 32271042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 6316877 - 6316921
Alignment:
Q  140 agtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    |||||||||||||||||| ||||||||||||||||| | ||||||    
T  6316877 agtggcggagcctttcatgggctggggtgggccacggcccacccg 6316921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 9830607 - 9830652
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  9830607 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 9830652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 11635758 - 11635803
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| |||| |||||||||||||| ||||||    
T  11635758 cagtggcggagcccttcatgggctagggtgggccacgacccacccg 11635803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 34934415 - 34934370
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  34934415 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 34934370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 7012337 - 7012373
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  7012337 cagtggcggagcccttcatgggctggggtgggccacg 7012373  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 24797213 - 24797177
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  24797213 cagtggcggagcccttcatgggctggggtgggccacg 24797177  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 41838114 - 41838078
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  41838114 cagtggcggagcccttcatgggctggggtgggccacg 41838078  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 44724224 - 44724177
Alignment:
Q  137 tgcagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  44724224 tgcagtggcggagcccttcatgggctggggtgggccacggcccacccg 44724177  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 26873702 - 26873747
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  26873702 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 26873747  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 44468177 - 44468144
Alignment:
Q  142 tggcggagcctttcataggctggggtgggccacg 175  Q
    |||||||||| |||||||||||||||||||||||    
T  44468177 tggcggagcccttcataggctggggtgggccacg 44468144  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 36358469 - 36358433
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  36358469 cagtggcggagcccttcatgggctggggtgggccacg 36358433  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 36675646 - 36675610
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  36675646 cagtggcggagcccttcatgggctggggtgggccacg 36675610  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49085659 - 49085718
Alignment:
Q  1 aggttttcagaaaggcacttatgcaatcacttcaagaggatgaagaaaaacctgtaagtt 60  Q
    |||||||||||||| | ||||||||||||||||| |||||||| || ||  |||||||||    
T  49085659 aggttttcagaaagacgcttatgcaatcacttcaggaggatgaggataattctgtaagtt 49085718  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 36584422 - 36584468
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    |||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  36584422 gcagtggcggagcccttcatgggctggggtgggccacggcccacccg 36584468  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 40228591 - 40228545
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    |||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  40228591 gcagtggcggagcccttcatgggctggggtgggccacggcccacccg 40228545  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 6755828 - 6755873
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  6755828 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 6755873  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 13233229 - 13233274
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||| | ||||||||||||||||||||||| | ||||||    
T  13233229 cagtggcggagtccttcataggctggggtgggccacggcccacccg 13233274  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 18491185 - 18491222
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacg 175  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  18491185 gcagtggcggagcccttcatgggctggggtgggccacg 18491222  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 44817708 - 44817663
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  44817708 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 44817663  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 51001475 - 51001520
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  51001475 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 51001520  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 11651125 - 11651089
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  11651125 cagtggcggagcccttcatgggctggggtgggccacg 11651089  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 19653803 - 19653767
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  19653803 cagtggcggagcccttcatgggctggggtgggccacg 19653767  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 44134493 - 44134529
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  44134493 cagtggcggagcccttcatgggctggggtgggccacg 44134529  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 64933 - 64978
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||    
T  64933 cagtggcggagcccttcatgggctggggtgggccacggcccacccg 64978  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 2660997 - 2660952
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacgacgcacccg 184  Q
    ||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  2660997 cagtggcggagcccttcatgggctgggatgggccacgacccacccg 2660952  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 26468447 - 26468484
Alignment:
Q  138 gcagtggcggagcctttcataggctggggtgggccacg 175  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  26468447 gcagtggcggagcctttcatgggctgggatgggccacg 26468484  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 12698493 - 12698529
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  12698493 cagtggcggagcccttcatgggctggggtgggccacg 12698529  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 11166 - 11202
Alignment:
Q  139 cagtggcggagcctttcataggctggggtgggccacg 175  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  11166 cagtggcggagcccttcatgggctggggtgggccacg 11202  T

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