View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19092_low_28 (Length: 216)
Name: NF19092_low_28
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 30020554 - 30020368
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30020554 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaa |
30020455 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
198 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30020454 |
attgacgaccaatagctttaacagtaaattcagcacttttagtagcaaagttattaataactcccatgacaacatccatggtcaccc |
30020368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 30103089 - 30103275
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30103089 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaa |
30103188 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
198 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30103189 |
attgacgaccaatagctttaacagtaaattcagcacttttagtagcaaagttattaataactcccatgacaacatccatggtcaccc |
30103275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 30121318 - 30121504
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30121318 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaa |
30121417 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
198 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30121418 |
attgacgaccaatagctttaacagtaaattcagcacttttagtagcaaagttattaataactcccatgacaacatccatggtcaccc |
30121504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 30040141 - 30040327
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30040141 |
tcatcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaa |
30040240 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
30040241 |
attgacgaccaatagcttcaaccgtaaattcggcagttttagtagcaaagttagtaataactcccatgataacatccatggtcaccc |
30040327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 30109619 - 30109805
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30109619 |
tcatcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaa |
30109718 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
30109719 |
attgacgaccaatagcttcaaccgtaaattcggcagttttagtagcaaagttagtaataactcccatgataacatccatggtcaccc |
30109805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 30234279 - 30234465
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30234279 |
tcatcaacattgtgttgcaaaatgtcttttattccctccacacgttggacatcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaa |
30234378 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
30234379 |
attgacgaccaatagcttcaaccgtaaattcggcagttttagtagcaaagttagtaataactcccatgataacatccatggtcaccc |
30234465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 30078960 - 30078786
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
30078960 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcttggtaaggttgcccttgtaat------------caa |
30078873 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30078872 |
attgacgaccaatagctttaaccgtaaattcagcagtcttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
30078786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 30136335 - 30136509
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
30136335 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcttggtaaggttgcccttgtaat------------caa |
30136422 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
198 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30136423 |
attgacgacgaatagcttcaaccgtaaattcagcagttttagtagcaaagttaataataactcccatgacaacatccatggtcaccc |
30136509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 30009275 - 30009128
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
||||||||| ||||||||| | ||| ||| ||||||||||| | |||||||||||| ||||| | |||||| | ||||||| ||||||||||||| || |
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|
| T |
30009275 |
tcatcaacagtgtgttgcacactgtttttaattccctccaacttctggacatcagttttcatctttttaaggtagtccttgtagtagagtatgtaacgaa |
30009176 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaa |
159 |
Q |
| |
|
||||||| ||||||| | |||| ||| ||||||| |||||| ||||| |
|
|
| T |
30009175 |
attgacgtccaataggtgcaaccataatttcagcaattttagcagcaa |
30009128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 30065772 - 30065625
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
||||||||| ||||||||| | ||| |||||||||||||| | ||||||||||||| ||||| | |||||| | ||||||| ||||||||||||| || |
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|
| T |
30065772 |
tcatcaacagtgtgttgcacactgttttttattccctccatcttttggacatcagttttcatctttttaaggtagtccttgtagtagagtatgtaacgaa |
30065673 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaa |
159 |
Q |
| |
|
||||||| ||||||| | |||| ||| ||||||| ||||| ||||| |
|
|
| T |
30065672 |
attgacgtccaataggtgcaaccataatttcagcaaatttagcagcaa |
30065625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 30168759 - 30168612
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
||||||||| ||||||||| | | ||||| ||||||||| | |||||||| |||| ||||||| |||||| | |||||| |||||||||||||||| |
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|
| T |
30168759 |
tcatcaacagtgtgttgcacactagcttttgttccctccagcttttggacattagttttcatcctttcaaggtttcgcttgtagtagagtatgtaaccaa |
30168660 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttagtagcaa |
159 |
Q |
| |
|
||||||||||||||| | |||| || | |||||| |||||| ||||| |
|
|
| T |
30168659 |
attgacgaccaataggtacaaccatatactcagcaattttagcagcaa |
30168612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 30277084 - 30276943
Alignment:
| Q |
12 |
tcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaa |
111 |
Q |
| |
|
||||||||| ||||||||| | ||||||||| |||||||| || ||||| | | | ||||| ||| |||||||||||||||||| | ||||||||||| |
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|
| T |
30277084 |
tcatcaacagtgtgttgcacactgtcttttaatccctccagattttggatagcggctgtcacccttaaaaggttgcccttgtaatatattatgtaaccaa |
30276985 |
T |
|
| Q |
112 |
attgacgaccaatagctttaaccgtaaattcagcacttttag |
153 |
Q |
| |
|
|||| | ||||||| | |||||||||||||| | |||||| |
|
|
| T |
30276984 |
attgttgtccaataggtgcaaccgtaaattcagaaattttag |
30276943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 30187246 - 30187349
Alignment:
| Q |
56 |
ttggacatcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatagctttaaccgtaaattcagcacttttagta |
155 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| | |||| || | |||||| |||||| | |
|
|
| T |
30187246 |
ttggacatcagtttccatcctttgaaggttgtccttgtagtagagtatgtaaccaaattgacgaccaataggtacaaccatatactcagcaattttagca |
30187345 |
T |
|
| Q |
156 |
gcaa |
159 |
Q |
| |
|
|||| |
|
|
| T |
30187346 |
gcaa |
30187349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 30787766 - 30787720
Alignment:
| Q |
80 |
aaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag |
126 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
30787766 |
aaggttgcccttgtagtagagtatgtaaccaaattgacgtccaatag |
30787720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 30249433 - 30249370
Alignment:
| Q |
63 |
tcagttgtcatcctggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag |
126 |
Q |
| |
|
|||||| ||||||| |||||| | |||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
30249433 |
tcagttctcatcctttcaaggtttctcttgtagtagagtatgtaaccaaattgacgtccaatag |
30249370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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