View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_29 (Length: 216)
Name: NF19092_low_29
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 9714041 - 9713833
Alignment:
| Q |
1 |
agttcttaggcggaccgcttcataagcagtcgaccatagatcagtcattaaaattattagaaatttcaatgatcatcgacgatactatattagaaataaa |
100 |
Q |
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| T |
9714041 |
agttcttaggcggaccgcttcataagcagtcgaccatagatcagtcattaaaattattagaaatttcaacgaccatcgacgatactacattagaaataaa |
9713942 |
T |
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| Q |
101 |
tgagctatttacatattagtacggttaatttcacgacccttatatttacagttaatttggtgacttatagatatcggttcaatacgaactacatatttat |
200 |
Q |
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| T |
9713941 |
tgagttatctacatatcagtacggttaattttacgacccttatatttatagttaatttggtgacttatagatgtcggttcaatacgaactacatatttat |
9713842 |
T |
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| Q |
201 |
tttcctttg |
209 |
Q |
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||||||||| |
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| T |
9713841 |
tttcctttg |
9713833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 16952611 - 16952563
Alignment:
| Q |
158 |
tggtgactt-atagatatcggttcaatacgaactacatatttattttcc |
205 |
Q |
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||||||||| || ||||||||||||||| || ||||||||||||||||| |
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| T |
16952611 |
tggtgacttgattgatatcggttcaataggagctacatatttattttcc |
16952563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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