View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_32 (Length: 210)
Name: NF19092_low_32
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32098510 - 32098310
Alignment:
| Q |
1 |
atacatgcacatactgatttatatgatatagtcacatgcatttttcttgccatttttatttgaatatgtgtgaattattctgatgttcgatgttttcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32098510 |
atacatgcacatactgatttatatgatatagtcacatgcatttttcttgccatttttatttgaatatgtgtgaattattctgatgttcgatgttttcatg |
32098411 |
T |
|
| Q |
101 |
cagtgtgcaaaagtagatctacagttccaatcaataatactgtctccaactgaaagagaaccactctttgttggaacagtattccctggggtgagtataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32098410 |
cagtgtgcaaaagtagatctacagttccaatcaataatactgtctccaactgaaagagaaccactctttgttggaacagtattccctggggtgagtataa |
32098311 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
32098310 |
t |
32098310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32081275 - 32081075
Alignment:
| Q |
1 |
atacatgcacatactgatttatatgatatagtcacatgcatttttcttgccatttttatttgaatatgtgtgaattattctgatgttcgatgttttcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
32081275 |
atacatgcacatactgatttatatgatatagtcacatgcatttttcttgccatttttatttgaatatgtgtgaattattttgatgttaaatgttttcatg |
32081176 |
T |
|
| Q |
101 |
cagtgtgcaaaagtagatctacagttccaatcaataatactgtctccaactgaaagagaaccactctttgttggaacagtattccctggggtgagtataa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32081175 |
cagtgtgcaaaagtagatctacagttccaaacaataatactgtctccaactgaaagagaaccactctttgttggaacagtattccctggggtgagtataa |
32081076 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
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|
| T |
32081075 |
t |
32081075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32069224 - 32069024
Alignment:
| Q |
1 |
atacatgcacatactgatttatatgatatagtcacatgcatttttcttgccatttttatttgaatatgtgtgaattattctgatgttcgatgttttcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32069224 |
atacatgcacatactgatttatatgatatagtcacatgcatttttcttgccatttttatttgaatatgtgtgaattattctgatgttaaatgttttcatg |
32069125 |
T |
|
| Q |
101 |
cagtgtgcaaaagtagatctacagttccaatcaataatactgtctccaactgaaagagaaccactctttgttggaacagtattccctggggtgagtataa |
200 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32069124 |
cagtgtgcaaaagtagatctacagttccaaacaataatattgtctccaactgaaagggaaccactctttgttggaacagttttccctggggtgagtataa |
32069025 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
32069024 |
t |
32069024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 32098633 - 32098524
Alignment:
| Q |
1 |
atacatgcacatactgatttatatgatatagtcacatgcatttttcttgccatttttatttgaatatgtgtgaattattctgatgttcgatgttttcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
32098633 |
atacatgcacatactgatttatatgatatagtcacatgcatttttcttgccatttttatttgaatatgtgtgaattattatgatgttaaatgttttcatg |
32098534 |
T |
|
| Q |
101 |
cagtgtgcaa |
110 |
Q |
| |
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|||||||||| |
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|
| T |
32098533 |
cagtgtgcaa |
32098524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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