View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19092_low_5 (Length: 536)

Name: NF19092_low_5
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19092_low_5
NF19092_low_5
[»] chr6 (1 HSPs)
chr6 (133-500)||(2481464-2481831)
[»] chr4 (2 HSPs)
chr4 (133-500)||(12632286-12632653)
chr4 (133-500)||(27107993-27108360)
[»] chr1 (2 HSPs)
chr1 (133-500)||(44680606-44680973)
chr1 (133-475)||(23271873-23272215)
[»] chr3 (2 HSPs)
chr3 (135-272)||(4709008-4709145)
chr3 (130-231)||(4708773-4708873)
[»] chr8 (2 HSPs)
chr8 (63-120)||(18616319-18616376)
chr8 (134-189)||(18616199-18616254)
[»] chr5 (2 HSPs)
chr5 (168-230)||(39789350-39789412)
chr5 (290-473)||(39789103-39789286)
[»] chr2 (1 HSPs)
chr2 (145-210)||(13510120-13510187)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 133 - 500
Target Start/End: Original strand, 2481464 - 2481831
Alignment:
Q  133 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 232  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  2481464 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 2481563  T
Q  233 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 332  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  2481564 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 2481663  T
Q  333 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 432  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| |||     
T  2481664 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt 2481763  T
Q  433 tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt 500  Q
     ||| | |||  ||| ||||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  2481764 cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt 2481831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 133 - 500
Target Start/End: Complemental strand, 12632653 - 12632286
Alignment:
Q  133 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 232  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  12632653 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 12632554  T
Q  233 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 332  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  12632553 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 12632454  T
Q  333 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 432  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| |||     
T  12632453 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt 12632354  T
Q  433 tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt 500  Q
     ||| | |||  ||| ||||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  12632353 cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt 12632286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 133 - 500
Target Start/End: Complemental strand, 27108360 - 27107993
Alignment:
Q  133 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 232  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  27108360 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 27108261  T
Q  233 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 332  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  27108260 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 27108161  T
Q  333 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 432  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| |||     
T  27108160 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt 27108061  T
Q  433 tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt 500  Q
     ||| | |||  ||| ||||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  27108060 cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt 27107993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 133 - 500
Target Start/End: Complemental strand, 44680973 - 44680606
Alignment:
Q  133 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 232  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  44680973 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 44680874  T
Q  233 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 332  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  44680873 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 44680774  T
Q  333 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 432  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||||||||||| ||||||| |||     
T  44680773 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatatttccaactgagtggcgagt 44680674  T
Q  433 tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt 500  Q
     ||| | |||  |||  |||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  44680673 cacatcgtttattgtcaaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt 44680606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 133 - 475
Target Start/End: Complemental strand, 23272215 - 23271873
Alignment:
Q  133 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 232  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  23272215 tgagacaaattgtgttccatttgtttgtcaaatttttcttagtgaagaagaagcttatgtcttttataagagatatgcttatcaacaagggttctcaatt 23272116  T
Q  233 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 332  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||| | | |||||||||||||    
T  23272115 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgacaataatggaaccatcaa 23272016  T
Q  333 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 432  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| |||     
T  23272015 aagagcagagaaatagacaattgtcaaagtgtaaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt 23271916  T
Q  433 tacaacctttgatgttgaacataaccatggtttgctaaaccaa 475  Q
     ||| | |||  ||| |||||||||||||||||||||| ||||    
T  23271915 cacatcgtttattgtcgaacataaccatggtttgctaacccaa 23271873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 4709145 - 4709008
Alignment:
Q  135 agacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatnnn 234  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||  || |||||       
T  4709145 agacaaattttgtttcctttgttggtcaaatttttcttagtgaagaagaaggatatgtcttttataagagatatgcttatcagcaagaattgtcaataaa 4709046  T
Q  235 nnnnggtagattcacaaacaagaatggggttatgagca 272  Q
        |||||||||  ||| |||||||||||||| ||||    
T  4709045 aaaaggtagattcgtaaaaaagaatggggttattagca 4709008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 4708773 - 4708873
Alignment:
Q  130 taatgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctca 229  Q
    |||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  4708773 taatgagacaaattatgttctctttgttggtcgaattttttttagtgaaaaagaagcatgtct-ttttataagagatatgcttatcaacaagggttctca 4708871  T
Q  230 at 231  Q
    ||    
T  4708872 at 4708873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 18616376 - 18616319
Alignment:
Q  63 agcatgatttagtgaaggacttgttagtggttgataacataggaagttctgagaaaga 120  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  18616376 agcatgatttagtgaaggacttgttagtagttgataacatagaaagttctgagaaaga 18616319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 18616254 - 18616199
Alignment:
Q  134 gagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatt 189  Q
    |||||||||||||||   |||| ||||||||||||||||| |||| ||||||||||    
T  18616254 gagacaaattgtgttttttttgctggtcaaatttttcttaatgaaaaagaagcatt 18616199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 39789412 - 39789350
Alignment:
Q  168 ttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaa 230  Q
    |||||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||||||||    
T  39789412 ttcttagtgaagaagaagaatttatcttttataagatatatgcatatcaacacgggttctcaa 39789350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 473
Target Start/End: Complemental strand, 39789286 - 39789103
Alignment:
Q  290 catcgtgaaggtagagcctccttgaaattcatggaaccatcaaaagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaatta 389  Q
    |||| |||||||| || |||||  ||| |||  |||||||||||||| || ||||| |||||||| ||| |||  || || ||||||||||||| |||      
T  39789286 catcatgaaggtaaagtctcctgaaaaatcaacgaaccatcaaaagaacaaagaaaaagagaatcatcatagtacgaatgtaaagctcatttacgaatct 39789187  T
Q  390 aattacaaaagtgtcatgatatatttccaattgagtggtgaggtacaacctttgatgttgaacataaccatggtttgctaaacc 473  Q
      |||||| |||    ||||| ||||  || ||||||| ||| |||||  |||| || ||||||||||||||||||||||||||    
T  39789186 cgttacaatagtcctgtgatacatttttaagtgagtggcgagttacaaagtttgttgatgaacataaccatggtttgctaaacc 39789103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 13510120 - 13510187
Alignment:
Q  145 tgttccctttgttggtcaaat--ttttcttagtgaagaagaagcatttgtcttttataagagatatgc 210  Q
    |||||| ||||||||||||||  |||||||||  | |||||| |||||||||| ||||||||||||||    
T  13510120 tgttccttttgttggtcaaatatttttcttagcaaggaagaaacatttgtcttctataagagatatgc 13510187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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