View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_7 (Length: 428)
Name: NF19092_low_7
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 51987167 - 51986846
Alignment:
| Q |
13 |
aatatagatttgaaaaa-taataatgacacattgattttgtttaagctcaaatggtagcttttgccaaagttgtggtagacaggtagtgatgatgtctct |
111 |
Q |
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| T |
51987167 |
aatatagatttgaaaaaataataatgacacattgattttgtttaagctcaaatggtagcttttgccaaagttatggcag--------tgataatgtttct |
51987076 |
T |
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| Q |
112 |
actatacttaccgtgaatttaaacatacatatctttcatgcgtaactgtagagactaataattcgagttttgtgggattcatattgacagtcaagtgact |
211 |
Q |
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| T |
51987075 |
actatacttaccgtaaattcaaacatacatatccttcatgcgtaactgtagagactaatcactcgaattttgtaggattcatattgaccgtcaagtgact |
51986976 |
T |
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| Q |
212 |
ttag--------------atttatatcatgtctactaggtgatcttgggtaaataaaaaattggattgattttaatcnnnnnnnnnnnnnttggtttgat |
297 |
Q |
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| T |
51986975 |
ttagttcagctaaaagatatttatatcatgtctactaggtgatcttgggtaaataaaaaattggattgattttaatc-aaaaaaaaataattggtttgat |
51986877 |
T |
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| Q |
298 |
tatgttcatgtaagaacgtatgaggtgtacc |
328 |
Q |
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| T |
51986876 |
tatgttcatgtaagaacgtatgaggtgtacc |
51986846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 51985786 - 51985712
Alignment:
| Q |
334 |
agtcggtggaaaac-cccacgtcactgaccagactccatgaatatctttacccattgttttaccatcaaatgacc |
407 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51985786 |
agtcggtggaaaactcccacgtcactgaccagactccatgaatatctttagccattgttttaccatcaaatgacc |
51985712 |
T |
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