View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_8 (Length: 380)
Name: NF19092_low_8
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 96 - 363
Target Start/End: Complemental strand, 9169742 - 9169491
Alignment:
| Q |
96 |
ttgtgagtgacatgttgaatgaatcactcttcaaacttgtataatttcnnnnnnnnnnnnctttgtaagccctcttagaggaggcagaagataatagaca |
195 |
Q |
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| T |
9169742 |
ttgtgagtgacatgttgaatgaatcactcttcaaacttgtataatttcatatatat----cttagtaagccctcttagaggaggcagaagataatagaca |
9169647 |
T |
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| Q |
196 |
tatactagtagtctagtaagctctatcctttgaaaattgaaaagaatgctgcaataagtatagattaagaatcatccaagtccaagaccatcacgacaaa |
295 |
Q |
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| T |
9169646 |
tatactagtagtctagtaag------------aaaattgaaaataatgctgcaataagtatagattaaaaatcatccaagtccaagaccatcactacaaa |
9169559 |
T |
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| Q |
296 |
attttcacatataacaagtcaacaactacaattttgtccttaataattaacttatacaggtgaaattc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9169558 |
attttcacatataacaagtcaacaactacaattttgtccttaataattaacttatacaggtgaaattc |
9169491 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 9258594 - 9258649
Alignment:
| Q |
29 |
tacaattgagattcaagggacatccaatggatgcatcactcagaccaattccaagg |
84 |
Q |
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| T |
9258594 |
tacagttgagcttgaagggacatccaatggaagcatcacttagaccatttccaagg |
9258649 |
T |
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