View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19092_low_9 (Length: 350)
Name: NF19092_low_9
Description: NF19092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19092_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 44707016 - 44707350
Alignment:
| Q |
1 |
cctgtactataaagagaagcatgagtatatgatttttatcnnnnnnnnatatgctacatttatcgatggtgtttgaaaatgtcttgtgagattctaaata |
100 |
Q |
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| T |
44707016 |
cctgtactataaagagaagcatgagtatatgatttt-atcttttttttatatgctacatttatcgatggtgtttgaaaatgtcttgtgagattctaaata |
44707114 |
T |
|
| Q |
101 |
caaaaccataccgttaagagcaccgctgtgtctgctccctgtgaattcttaaaggtaacatatgcagtcttagtgctctcagtttccctgcaaaaaattc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44707115 |
caaaaccataccgtcaagagcaccgctgtgtctgctccctgtgaattcttaaaggtaacatatgcagtcttagtgctctcagtttccctgcaaaaaattc |
44707214 |
T |
|
| Q |
201 |
catgtaagtgaattggggtgagtggtgaaaatttgacaaatactttaaacaatgacaatcattaaaatggatgagtctaacttttgcatctcaacatatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44707215 |
catgtaagtgaattggggtgagtggtgaaaatttgacaaatactttaaacaatgacaatcattaaaatggatgagtctaacttttgcatctcaacatatt |
44707314 |
T |
|
| Q |
301 |
gaatgtcaccagagaatgagaaaaactctttcatat |
336 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
44707315 |
gaatgtcaccagagaatgagaaaaactctttgatat |
44707350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 11764395 - 11764450
Alignment:
| Q |
107 |
cataccgttaagagcaccgctgtgtctgctccctgtgaattcttaaaggtaacata |
162 |
Q |
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| T |
11764395 |
cataccgtcaagagaactgctgtctctgctccctgtgaatccttaaaggtaacata |
11764450 |
T |
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