View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_high_11 (Length: 383)
Name: NF19093_high_11
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 334
Target Start/End: Complemental strand, 48684587 - 48684263
Alignment:
| Q |
10 |
attattctcaataaccaaaatcatacatatctccaaacctaaatactacaatagtcatggttggaaaacaccaatacttaaacttcttccttatttttct |
109 |
Q |
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| T |
48684587 |
attattctcaataaccaaaatcatacatatctccaaacctaaatactacaatagtcatggttggaaaacaccaatactttaacttcttccttatttttct |
48684488 |
T |
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| Q |
110 |
ttctttgtccttgttgtgcatccaatatgggatgtcaaggccactgaacaccttggaactaaaagagagtatctttatgaaatcacgacacaatatggtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48684487 |
ttctttgtccttgttgtgcatccaatatgggatgtcaaggccactgaacaccttggaactaaaagagagtatctttatgaaatcaccacacaatatggtt |
48684388 |
T |
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| Q |
210 |
gtgaagaactccttggttgtggaaggtcataaacagaataaaaacattaggagactggaaattgacaactctggtcctagccctgatggaccagggcatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48684387 |
gtgaagaactccttggttgtggaaggtcataaacagaataaaaacattaggagactggaaattgacaactctggtcctagccctgatggaccagggcatt |
48684288 |
T |
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| Q |
310 |
aacggggaaactctctcaactcaat |
334 |
Q |
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||||||||||||||||||||||||| |
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| T |
48684287 |
aacggggaaactctctcaactcaat |
48684263 |
T |
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