View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19093_high_12 (Length: 364)
Name: NF19093_high_12
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_12 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 1775809 - 1775446
Alignment:
| Q |
1 |
aaaccgatcttcaattgtacctatttagtgctcttgtgattctacttctaatgttggaatattttctcttaattctataacaacatttctagatgaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1775809 |
aaaccgatcttcaattgtacctatttagtgctcttgtgattctacttctaatgttggaatattttctcttaattctataacaacatttctagatgagcca |
1775710 |
T |
|
| Q |
101 |
ctttctatgctttctcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatggaattcctcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1775709 |
ctttctatgctttctcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatggaattcctcaaaa |
1775610 |
T |
|
| Q |
201 |
gccattgatccacacattgagcatgaaaattgtgctcacaaataggcaacaatctacacttatccccaatagtgaaattctccaaacaaattgcacaatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1775609 |
gccattgatccacacattgagcatgaaaattgtgctcacaaataggcaacaatctacacttatccccaatagtgaaattctccaaacaaattgcacaatc |
1775510 |
T |
|
| Q |
301 |
taaagggttacttccattttcttttgcaacataatcataacatggaagcttctccaaatcaact |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1775509 |
taaagggttacttccattttcttttgcaacataatcataacatggaagcttctctaaatcaact |
1775446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 1769042 - 1768696
Alignment:
| Q |
18 |
tacctatttagtgctcttgtgattctacttctaatgttggaatattttctcttaattctataacaacatttctagatgaaccactttctatgctttctct |
117 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| |||||||| |||||||||| ||||||| | |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
1769042 |
tacctaattaatgctcttgtgattctacttcttatgttggattattttctctcaattctaaaccaacatttctagatagaccactttcaatgctttctct |
1768943 |
T |
|
| Q |
118 |
tccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatggaattcctcaaaagccattgatccacacat |
217 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||||||| |||| ||||||||||||| |||||||| | | || |||| ||||||| |||||||||| |
|
|
| T |
1768942 |
tccattgttacctaaaacaactttgtttgcactatgagaacaaaccctagatctacaaataggacaaattggagtcttcaatagccatttatccacacat |
1768843 |
T |
|
| Q |
218 |
tgagcatgaaaattgtgctcacaaataggcaacaatctacacttatccccaatagtgaaattctccaaacaaattgcaca---atctaaagggttacttc |
314 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1768842 |
tgagcatgaaaaatgtgcttacaaataggcaacaatctacacttatccccaatagtgaaattctccaaacaaattgcacaaatatccaaagggttacttc |
1768743 |
T |
|
| Q |
315 |
cattttcttttgcaacataatcataacatggaagcttctccaaatca |
361 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1768742 |
cattttcttctgcaacataatcataacatggaagcttctccaaatca |
1768696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 104 - 362
Target Start/End: Complemental strand, 1766310 - 1766055
Alignment:
| Q |
104 |
tctatgctttctcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatggaattcctcaaaagcc |
203 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
1766310 |
tctatgatttatcttccattgttacctataacaactttgtctccactatgagaaccaaccatagatctacaaattggacaaatgggatgcttcaaaagcc |
1766211 |
T |
|
| Q |
204 |
attgatccacacattgagcatgaaaattgtgctcacaaataggcaacaatctacacttatccccaatagtgaaattctccaaacaaattgcacaatctaa |
303 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
1766210 |
attgatccacacattgagcatgaaagctatgcttgcaaataggtaacaatctacatttatccccaatagtgaaattctccaagcaaattgcacaatcaat |
1766111 |
T |
|
| Q |
304 |
agggttacttccattttcttttgcaacataatcataacatggaagcttctccaaatcaa |
362 |
Q |
| |
|
|| | || ||| || || |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1766110 |
agtgctagttctatgatc---aacaacataatcataacatggaagattctccaaatcaa |
1766055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University