View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_high_13 (Length: 349)
Name: NF19093_high_13
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 10119677 - 10119353
Alignment:
| Q |
16 |
atggtaagtataccgtgacaaacaatttaaaaataaataaattaaagtatatgtcacgtctatgg--------aagatacgttggtttaaaatgtcaaac |
107 |
Q |
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| T |
10119677 |
atggtaagcataccatgacaaacaatttaaaaataaataaattaaagtatatgtcacgtctatggctcagtttaaggtacattggtttaaaatgtcaaac |
10119578 |
T |
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| Q |
108 |
ctaatatttaaacgaaataccttcgggttaaaatggattggttcgacttagattaaaacttgattataatgggttaaaatgcaaattgaattgatttgga |
207 |
Q |
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| T |
10119577 |
ctaatattcaaacgaaataccttcggattaaaatggattggttcgacttagattagaacttaattataatgggttgaaatgcaaattgaattaatttgga |
10119478 |
T |
|
| Q |
208 |
tatacgagttgactcgtacccataaatacctctatccaaaatcataacataacatctcaactgaaaaatctatataagagaagactctcaatttcgtccc |
307 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10119477 |
tatacgagtcaactcgtacccataaatacctctatccaaaatcataacataacatctcaactgaaaaatctatataagagaagactctcaattttgtccc |
10119378 |
T |
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| Q |
308 |
ttaacccactttgtatactttttct |
332 |
Q |
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||||||||||||||||||||||||| |
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| T |
10119377 |
ttaacccactttgtatactttttct |
10119353 |
T |
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