View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_high_15 (Length: 314)
Name: NF19093_high_15
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 51148299 - 51147993
Alignment:
| Q |
1 |
ccatgctaagagcaaaaaagacctgaaaatcaggaaacaaaaacatcaatgctagaaaaatgcgttaggttcttccaagtgcgatatcacgaagaggatt |
100 |
Q |
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| T |
51148299 |
ccatgctaagagcaaaaaagacctgaaaatcaggaaacaaaaacatcaatgctagaaaaatgcgttaggttcttccaagtgcgatgtcacgaagaggatt |
51148200 |
T |
|
| Q |
101 |
atttccctcacattgagctcatttatgctttgcgttaggtatccattggtatacccctttgcagatcaatgttgttggttatggcattttgcaattttca |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51148199 |
atttccctcacgttgagctcatttatgctttgcgttaggtatccattggtatacccctttgcagatcaatgttgttggttatggcattttgcaattttca |
51148100 |
T |
|
| Q |
201 |
tctttaagtgattgtgacagagaattgtctgtggtatttttattgggttgggctcattgttattctaaatatatttcatagtgcaattttttgattgagt |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51148099 |
tctttaagtgattgtgacagagaattgtttgtggtatttttattgggttggggtcattgttattctaaatatattttatagtgcaattttttgattgagt |
51148000 |
T |
|
| Q |
301 |
ctctgat |
307 |
Q |
| |
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||||||| |
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| T |
51147999 |
ctctgat |
51147993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 293
Target Start/End: Complemental strand, 51159089 - 51158940
Alignment:
| Q |
144 |
cattggtatacccctttgcagatcaatgttgttggttatggcattttgcaattttcatctttaagtgattgtgacagagaattgtctgtggtatttttat |
243 |
Q |
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| T |
51159089 |
cattgctatatccctttgcgggtcattgttgttgcttaatgcattttacgattttcgtctttaagtaatagtgggaaagaattgtttgtgccatttttat |
51158990 |
T |
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| Q |
244 |
tgggttgggctcattgttattctaaatatatttcatagtgcaattttttg |
293 |
Q |
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| T |
51158989 |
tggttggaaattatttttattctaattatatttcatagtgcaattttttg |
51158940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 51159191 - 51159122
Alignment:
| Q |
1 |
ccatgctaagagcaaaaaagacctgaaaatcaggaaacaaaaacatcaatgctagaaaaatgcgttaggtt |
71 |
Q |
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||||||| || |||||||||||||| ||||||||||||| ||| ||||||| || |||| || |||||||| |
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| T |
51159191 |
ccatgctgagtgcaaaaaagacctgcaaatcaggaaacacaaa-atcaatggtataaaattgtgttaggtt |
51159122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 29934839 - 29934892
Alignment:
| Q |
9 |
agagcaaaaaagacctgaaaatcaggaaacaaaaacatcaatgctagaaaaatg |
62 |
Q |
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|||||||||| |||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
29934839 |
agagcaaaaattacctacaaatcaggaatcaaaaccatcaatgctagaaaaatg |
29934892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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