View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19093_high_16 (Length: 298)
Name: NF19093_high_16
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9497849 - 9498024
Alignment:
| Q |
1 |
tgtggattatatgacgagaaagaagcacgaattttccatcacaatgatgatacattgcaacgttttcttgataaaattagttgcaaatcttttttgtggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9497849 |
tgtggattatatgacgagaaagaagcacgaattttccatcacaatgatgatacattgcaacgttttcttgataaaattagttgcaaattttttttgtggt |
9497948 |
T |
|
| Q |
101 |
tgaaagcaaaactatgttaattttatttttcattatcatcgttggtttaatcctttttatgtttgaaatgtaacaa |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9497949 |
tgaaagcaaaactatgttaattttatttttcattatcattgttggtttattcctttttatgtttgaaatgtaacaa |
9498024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 9498100 - 9498142
Alignment:
| Q |
253 |
aacacttcttatactcgaatcgaaagtcaagattgttcatttc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9498100 |
aacacttcttatactcgaatcgaaagtcaagattgttcatttc |
9498142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University