View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_high_20 (Length: 243)
Name: NF19093_high_20
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 505533 - 505323
Alignment:
| Q |
15 |
aatattagactaatatattttgttaatgatgtaatgcatgaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaaga |
114 |
Q |
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| T |
505533 |
aatattagactaatatatgttgttaatgatgtaatgcatgaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaaga |
505434 |
T |
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| Q |
115 |
gtagaaaggttttctgttgcgtatttcttatgcccttcaaacgagaccatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaag |
214 |
Q |
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| T |
505433 |
gtagaaaggttctctgttgcgtatttcttatgcccttcaaatgacaccatgattgagagttgcaaagagccctctatataccgcaaattcagctttaaag |
505334 |
T |
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| Q |
215 |
aatatagacaa |
225 |
Q |
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||||||||||| |
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| T |
505333 |
aatatagacaa |
505323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 16702318 - 16702189
Alignment:
| Q |
56 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttcaaa |
155 |
Q |
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| T |
16702318 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttcaaa |
16702219 |
T |
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| Q |
156 |
cgagaccatgattgagagttgcaaagagcc |
185 |
Q |
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| T |
16702218 |
tgagagtgtgatagagagctgcaaaaagcc |
16702189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 17676554 - 17676425
Alignment:
| Q |
56 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttcaaa |
155 |
Q |
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| T |
17676554 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttcaaa |
17676455 |
T |
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| Q |
156 |
cgagaccatgattgagagttgcaaagagcc |
185 |
Q |
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|||| |||| ||||| |||||| |||| |
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| T |
17676454 |
tgagagtgtgatagagagctgcaaaaagcc |
17676425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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