View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_high_23 (Length: 236)
Name: NF19093_high_23
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51148281 - 51148501
Alignment:
| Q |
1 |
ttttttgctcttagcatggcagctatgggagtctcccaatctgggaccttggtccctgattcaactaatgcaaaaagtgctgctgcttccatatttgcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51148281 |
ttttttgctcttagcatggcagctatgggagtctcccaatctgggaccttggtccctgattcaactaatgcaaaaagtgctgctgcttccatatttgcta |
51148380 |
T |
|
| Q |
101 |
ttcttgatcagaagtcacaaatagactctagtgatgaatctggcatgacactggaagaaatcaagggagatattgagtttaaccatgttagtttcaagta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51148381 |
ttcttgatcagaagtcacaaatagactctagtgatgaatctggcatgacactggaagaagtcaagggagatattgagtttaaccatgttagtttcaagta |
51148480 |
T |
|
| Q |
201 |
tcctactagacttgatgttca |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
51148481 |
tcctactagacttgatgttca |
51148501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51159173 - 51159393
Alignment:
| Q |
1 |
ttttttgctcttagcatggcagctatgggagtctcccaatctgggaccttggtccctgattcaactaatgcaaaaagtgctgctgcttccatatttgcta |
100 |
Q |
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|||||||| || ||||||||||||||||| ||||| ||||| |||| |||| | ||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
51159173 |
ttttttgcactcagcatggcagctatgggggtctctcaatcagggagcttgcttcctgattcaacaaatgcaaaaagtgctactgcttccatatttgcta |
51159272 |
T |
|
| Q |
101 |
ttcttgatcagaagtcacaaatagactctagtgatgaatctggcatgacactggaagaaatcaagggagatattgagtttaaccatgttagtttcaagta |
200 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
51159273 |
ttcttgatcagaagtcacaaatagaccctggtgatgaatctggcatgacactggaagaagtcaagggagaaattgagtttaaccatgttagtttcaagta |
51159372 |
T |
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| Q |
201 |
tcctactagacttgatgttca |
221 |
Q |
| |
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||| ||||||| |||||||| |
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| T |
51159373 |
tcccactagacccgatgttca |
51159393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 29934848 - 29934629
Alignment:
| Q |
2 |
tttttgctcttagcatggcagctatgggagtctcccaatctgggaccttggtccctgattcaactaatgcaaaaagtgctgctgcttccatatttgctat |
101 |
Q |
| |
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|||||||||| ||||||||||| ||||||||| |||| |||||||||||||| |||| || |||||||||||||||| ||||||| |||||||| || |
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| T |
29934848 |
tttttgctctcggcatggcagcttcgggagtctctcaattagggaccttggtcccagatttaattaatgcaaaaagtgctactgcttcaatatttgcaat |
29934749 |
T |
|
| Q |
102 |
tcttgatcagaagtcacaaatagactctagtgatgaatctggcatgacactggaagaaatcaagggagatattgagtttaaccatgttagtttcaagtat |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
29934748 |
tcttgatcagaagtcacaaatagattctagtgatgaatctgggatgacactggaagaagtcaagggagaaattgagtttaaccatgttagtttcaagtat |
29934649 |
T |
|
| Q |
202 |
cctactagacttgatgttca |
221 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
29934648 |
cctactagacctgatgttca |
29934629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51201783 - 51202003
Alignment:
| Q |
1 |
ttttttgctcttagcatggcagctatgggagtctcccaatctgggaccttggtccctgattcaactaatgcaaaaagtgctgctgcttccatatttgcta |
100 |
Q |
| |
|
||||| ||||| || ||||||||||| ||| | || ||||| ||| | ||| | ||||| |||||||| || |||||||| | ||||||||||||||||| |
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| T |
51201783 |
tttttcgctctaagtatggcagctataggactatctcaatccgggtcattgttacctgactcaactaaggcgaaaagtgcagttgcttccatatttgcta |
51201882 |
T |
|
| Q |
101 |
ttcttgatcagaagtcacaaatagactctagtgatgaatctggcatgacactggaagaaatcaagggagatattgagtttaaccatgttagtttcaagta |
200 |
Q |
| |
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|||||||| |||||||| ||||| | | ||||||||| || || ||| |||||||| |||||||||| ||||||||||| ||||| | ||||||||| |
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| T |
51201883 |
ttcttgataggaagtcactcatagatccaactgatgaatcaggaattacattggaagaagtcaagggagaaattgagtttaagcatgtcaatttcaagta |
51201982 |
T |
|
| Q |
201 |
tcctactagacttgatgttca |
221 |
Q |
| |
|
||||||||||| |||| |||| |
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| T |
51201983 |
tcctactagacctgatattca |
51202003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 51214891 - 51215040
Alignment:
| Q |
73 |
aaaagtgctgctgcttccatatttgctattcttgatcagaagtcacaaatagactctagtgatgaatctggcatgacactggaagaaatcaagggagata |
172 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||||| || |||| ||||||||| | |||||||| | |
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| T |
51214891 |
aaaagttcagctgcttcagtatttgctattcttgatcagaaatcaaaaatagataccagtgatgaatcaggaatgatactggaagatgtgaagggagaga |
51214990 |
T |
|
| Q |
173 |
ttgagtttaaccatgttagtttcaagtatcctactagacttgatgttcat |
222 |
Q |
| |
|
||||||| | ||||| | |||||||||||| || |||| |||||||||| |
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| T |
51214991 |
ttgagttccatcatgtcactttcaagtatccaaccagacctgatgttcat |
51215040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 49735097 - 49734945
Alignment:
| Q |
70 |
gcaaaaagtgctgctgcttccatatttgctattcttgatcagaagtcacaaatagactctagtgatgaatctggcatgacactggaagaaatcaagggag |
169 |
Q |
| |
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|||||||| ||| |||||| ||||||||||||||||||||| | ||| |||||||||||||||| ||||| || |||||| ||||||| | ||||||| |
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| T |
49735097 |
gcaaaaagctctgttgcttctatatttgctattcttgatcaggaatcaaaaatagactctagtgaagaatcaggaatgacattggaagatgtgaagggag |
49734998 |
T |
|
| Q |
170 |
atattgagtttaaccatgttagtttcaagtatcctactagacttgatgttcat |
222 |
Q |
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|||||||||| | ||||| | |||||||||||| ||||||| |||||||||| |
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| T |
49734997 |
atattgagttccatcatgtcactttcaagtatccaactagacctgatgttcat |
49734945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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