View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_high_4 (Length: 465)
Name: NF19093_high_4
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 3 - 451
Target Start/End: Original strand, 44842549 - 44842994
Alignment:
| Q |
3 |
gtcgaagaatattgcttgaacatgatgatgtcgatgaattattactcaaatttataattttgttggttaaggcatggatcaatgaagatatgcttataat |
102 |
Q |
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| T |
44842549 |
gtcgaacaatgttgcttgaacatgatgatgtcaatgaattattactcaaatttataattttgttggttaaggcatggatcaatgaagatatgcttataat |
44842648 |
T |
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| Q |
103 |
gaatactagaaagtagagaataaaagggtttatatgaagggcaagttttaaaatataggaaaagttttgtggtgatgagtaataatatttttgatgccaa |
202 |
Q |
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| T |
44842649 |
gaatactagaaagtagagaataaaagggtttatatgaagggcaagttttaaaatataggaaaagttttgtggtgatgagtaataatatttttgatgccaa |
44842748 |
T |
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| Q |
203 |
aaattaatgcgttgaagataaaattgaatttctaagagtttagcaagaagaagaaatgagaggggtaggaagaggcttagaagtgtgtgtgtgaagaagt |
302 |
Q |
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| T |
44842749 |
aaattaatgcgttgaagatagtattgaatttctaagagtttagcaagaagaagaaatgagaggggtaggaagaggcttagaagtgtgtgtgtgaagaagt |
44842848 |
T |
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| Q |
303 |
aaaaaatttctctaggtgttgttattgaagatgcaaacaaatggaagagatttttggttttgtgttctaaacccatttgtcttgatatggttctattcta |
402 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44842849 |
aaaaaatttctctagg---tgttattgaagatgcaaacaaatggaagagatttttggttttgtgttctaaacccatttgtcttgatatggttctattcta |
44842945 |
T |
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| Q |
403 |
tgtgacaaattaacatgtatgtatacataggatttattaagaagaaact |
451 |
Q |
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| T |
44842946 |
tgtgacaaattaacatgtatgtatacatagaatttattaagaagaaact |
44842994 |
T |
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