View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19093_high_5 (Length: 461)
Name: NF19093_high_5
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 11118900 - 11119355
Alignment:
| Q |
1 |
atatagcacatgatgtaggagtatatgatttacttgaatgcttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11118900 |
atatagcacatgatgtaggagtatatgatttacttgaatggttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgat |
11118999 |
T |
|
| Q |
101 |
tatacgacttcgaaaatactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119000 |
tatacgacttcgacaatactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataa |
11119099 |
T |
|
| Q |
201 |
cgttgtcaatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattg |
300 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119100 |
cgttgtcaattttgatccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattg |
11119199 |
T |
|
| Q |
301 |
ttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119200 |
ttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgg |
11119299 |
T |
|
| Q |
401 |
gtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaatttt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119300 |
gtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaatttt |
11119355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 41 - 457
Target Start/End: Original strand, 11111169 - 11111585
Alignment:
| Q |
41 |
cttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaactct |
140 |
Q |
| |
|
|||||| ||||||||| |||||||| || ||||||||||| |||||||| ||||||||||||||| ||||| | |||||||||||||| ||||||||||| |
|
|
| T |
11111169 |
cttcaacttcaggtgctcatacatttgggagagcacgttgccttttcatccttgatcgattatacaacttcaacaatactggcaaacccgatccaactct |
11111268 |
T |
|
| Q |
141 |
tgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaatttcgatccaacaactcctgataaattagac |
240 |
Q |
| |
|
||| ||||||||||| ||||||||| ||| ||||| ||||| |||||| ||||||||||| ||| |||||||| ||||| |||||||||| ||| ||| |
|
|
| T |
11111269 |
tgatacaacatacttacaacagttgcgaaaccaatgccctcagaatggaactggaaataaccgtgttaatttcgacccaacgactcctgatacattggac |
11111368 |
T |
|
| Q |
241 |
aagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaaca |
340 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11111369 |
aagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtgcagataccattagcattgtcaaca |
11111468 |
T |
|
| Q |
341 |
actttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattag |
440 |
Q |
| |
|
||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
11111469 |
gctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattag |
11111568 |
T |
|
| Q |
441 |
aaagcagtgcaatttta |
457 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
11111569 |
aaaacaatgcaatttta |
11111585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 456
Target Start/End: Complemental strand, 10793649 - 10793210
Alignment:
| Q |
19 |
gagtatatgatttacttgaatgcttcaattt--caggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaa |
116 |
Q |
| |
|
||||||||||||||||| |||||| ||| | ||||||| || ||||| || |||||||||||| ||| | |||||||||||||| ||||| || |
|
|
| T |
10793649 |
gagtatatgatttacttatatgcttgaatattccaggtgcacacacatttgggagagcacgttgttctttattcgttgatcgattatacaacttcagcaa |
10793550 |
T |
|
| Q |
117 |
tactggcaaacctgatccaactcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaatttcgat |
216 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
10793549 |
tactggcgaacctgatccaactcttgatacaacgtacttaaaacaattgcaaaacgaatgtcctcaaaatggacctggaaataaccgtgtaaatttcgac |
10793450 |
T |
|
| Q |
217 |
ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg |
316 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
10793449 |
ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg |
10793350 |
T |
|
| Q |
317 |
cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct |
416 |
Q |
| |
|
||||||||| ||||||||| || ||||||| || ||||||| || |||||| ||| ||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
10793349 |
cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct |
10793250 |
T |
|
| Q |
417 |
tactggaaagaaaggagaaattagaaagcagtgcaatttt |
456 |
Q |
| |
|
||| ||||||||||||||||| || || || ||||||||| |
|
|
| T |
10793249 |
taccggaaagaaaggagaaataaggaaacaatgcaatttt |
10793210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 207 - 452
Target Start/End: Original strand, 11156587 - 11156832
Alignment:
| Q |
207 |
caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctca |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
11156587 |
caatttcgatccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctca |
11156686 |
T |
|
| Q |
307 |
acaccgggtgcagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaata |
406 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||| || | | | | ||||| | |||||| ||| ||||| | |||||||||||||||| |||| |
|
|
| T |
11156687 |
acatccggtgcagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaata |
11156786 |
T |
|
| Q |
407 |
ttggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaa |
452 |
Q |
| |
|
|||| ||||| || || | ||||||||| |||||||| || ||||| |
|
|
| T |
11156787 |
ttggtgtgctaacagggacgaaaggagagattagaaaacaatgcaa |
11156832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 341
Target Start/End: Original strand, 11137476 - 11137779
Alignment:
| Q |
38 |
atgcttcaatttcaggtgcccatacattaggaagagcacgttgtcttttcatacttgatcgattatacgacttcgaaaatactggcaaacctgatccaac |
137 |
Q |
| |
|
||||||||| | |||||| |||||||| |||||||||||||| |||||| ||||||||||||| ||||| | ||| || |||||||||||||| |
|
|
| T |
11137476 |
atgcttcaaatgtaggtgctcatacattcggaagagcacgttgcactttcatcactgatcgattatacaacttcagcagtacaggaaaacctgatccaac |
11137575 |
T |
|
| Q |
138 |
tcttgacccaacatacttaaaacagttgcaaaaacaatgtcctcaaaatggacctggaaataacgttgtcaatttcgatccaacaactcctgataaatta |
237 |
Q |
| |
|
|||| | |||| || ||| || | || | ||| ||||||| | |||||| ||||||| | | |||||| || ||||| |||||||||||||| |
|
|
| T |
11137576 |
tcttaatacaacttatttacaagaattacgtaaaatatgtcctaatggtggaccaccaaataacctcgccaattttgacccaacgactcctgataaattt |
11137675 |
T |
|
| Q |
238 |
gacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtca |
337 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| ||| | ||||| ||||||||||||||||||| |
|
|
| T |
11137676 |
gacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtgctgataccattagcattgtca |
11137775 |
T |
|
| Q |
338 |
acaa |
341 |
Q |
| |
|
|||| |
|
|
| T |
11137776 |
acaa |
11137779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 346
Target Start/End: Original strand, 11149919 - 11150058
Alignment:
| Q |
207 |
caatttcgatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctca |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
11149919 |
caatttcgatccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctca |
11150018 |
T |
|
| Q |
307 |
acaccgggtgcagataccattagcattgtcaacaactttg |
346 |
Q |
| |
|
||| | ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
11150019 |
acatctggttcagataccattagcattgtcaacaaatttg |
11150058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 214 - 346
Target Start/End: Original strand, 11145957 - 11146089
Alignment:
| Q |
214 |
gatccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgg |
313 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| | | |
|
|
| T |
11145957 |
gatccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctg |
11146056 |
T |
|
| Q |
314 |
gtgcagataccattagcattgtcaacaactttg |
346 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
11146057 |
gtgctgataccattagcattgtcaacaactttg |
11146089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 456
Target Start/End: Original strand, 11137826 - 11137894
Alignment:
| Q |
388 |
atgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaatttt |
456 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || || |||||||| |||||||| || ||||||||| |
|
|
| T |
11137826 |
atgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagattagaaaacattgcaatttt |
11137894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 327
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
| Q |
269 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt |
327 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
11183671 |
aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt |
11183613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University