View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_high_6 (Length: 447)
Name: NF19093_high_6
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 129 - 434
Target Start/End: Original strand, 52876140 - 52876445
Alignment:
| Q |
129 |
catttcaaggggatgcataattgtatcgtaactctcactttaaggtataacatatgtcttatttcttctcataaaaagtaaaatatttgttcttttttca |
228 |
Q |
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| T |
52876140 |
catttcaaggggatgcataattgtattgtaactctcactttaaggtataacatatgtcttatttcttctcataaaaagtaaaatatttgttcttttttca |
52876239 |
T |
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| Q |
229 |
tattgtgtgcttgttaacttttcatttgtttttcaaatttatgagcagcaaacgtcccaattttggtcagaagactgtgaatttacctatgtttggagag |
328 |
Q |
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| T |
52876240 |
tattgtgtgcttgttaacttttcatttgtttttcaaatttatgagcagcaaacgtcccaattttggtcagaagactgtgaatttacctatgtttggagag |
52876339 |
T |
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| Q |
329 |
atttctattttctcactggtggtgttgctattctctgtggcatttgcgataatatgggctgctactcgacgagaatcattttcatggtttggccaagatg |
428 |
Q |
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| T |
52876340 |
atttctattttctcactggtggtgttgctattctctgtggcatttgcgataatatgggctgctactcgacgagaatcattttcatggtttggccaagatg |
52876439 |
T |
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| Q |
429 |
ttcttg |
434 |
Q |
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| T |
52876440 |
ttcttg |
52876445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 52876021 - 52876071
Alignment:
| Q |
11 |
tagattattctttactataaaaaatgtatcatatgaaactagtcaattcaa |
61 |
Q |
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| T |
52876021 |
tagatttttctttactataaaaaatgtatcatatgaaattagtcaattcaa |
52876071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 426
Target Start/End: Complemental strand, 256480 - 256345
Alignment:
| Q |
291 |
ttggtcagaagactgtgaatttacctatgtttggagagatttctattttctcactggtggtgttgctattctctgtggcatttgcgataatatgggctgc |
390 |
Q |
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| T |
256480 |
ttggtcaaaagaccgtgaatgtacctctatttggggagatttctattttctcgctggcagtgttcttattctgtctggcatttgctgttttctgggctgc |
256381 |
T |
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| Q |
391 |
tactcgacgagaatcattttcatggtttggccaaga |
426 |
Q |
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| T |
256380 |
tactcgacatgaatcttattcgtggattggccaaga |
256345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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