View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_high_7 (Length: 421)
Name: NF19093_high_7
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 41856756 - 41857161
Alignment:
| Q |
14 |
cagtaatagcaaaagtgatcacattttacacttgctaagatagagaccacaaaaatacatgtttttgaaagagatcacacacagttgcattgaaagtcat |
113 |
Q |
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| T |
41856756 |
cagtaatagcaaaagtgatcacattttacacttgctaagatagagaccacagaaatacatgtttttgaaagagatcacacacaattgcattgaaagtcat |
41856855 |
T |
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| Q |
114 |
ata--attgctgaataaatgggttaacaagtatggtttagctaagtgactaagcgcgggaatctaggtaa-taatcattatcaggttagacacttgggtt |
210 |
Q |
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| T |
41856856 |
atataattgctgaataaatgggttaacaagtatggtttagctaagtgactaagaatgggaatctaggtaagtaatcattatcaggttagacacttgggtt |
41856955 |
T |
|
| Q |
211 |
ctaggtaaatcttaggttggggtgcacaaggaatttaatattcatggaggcgaaaccttgattattttgtctttctcccagtatcagtctctcatgatct |
310 |
Q |
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| T |
41856956 |
ctaggtaaatcttaggttggggtgcacaaggaatttaatattcatggaggcgaaaccttgattattttgtctttctcccagtatcagtctctcatgatct |
41857055 |
T |
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| Q |
311 |
catcttcaattttcatagtactagatggtaattgttggaactttaatttctctaggaattcaaaagatacagaatattttcaattggattttcttctacc |
410 |
Q |
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| T |
41857056 |
catcttcaattttcatagtactagatgttaattgttggaactttaatttctctaggaattcaaaagatacagaatattttcaattggattttcttctacc |
41857155 |
T |
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| Q |
411 |
tttgct |
416 |
Q |
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| T |
41857156 |
tttgct |
41857161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 12789691 - 12789573
Alignment:
| Q |
40 |
tacacttgctaagatagagaccacaaaaatacatgtttttgaaagagatcacacacagttgcattgaaagtcatata--attgctgaataaatgggttaa |
137 |
Q |
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|||||||||||||||| |||||||| ||||||||||| | |||||| |||||||| |||||| |||||||||||| |||| |||||||||||||||| |
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| T |
12789691 |
tacacttgctaagatatagaccacagaaatacatgttct-gaaagatatcacacaa--ttgcat-gaaagtcatatataattgttgaataaatgggttaa |
12789596 |
T |
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| Q |
138 |
caagtatggtttagctaagtgac |
160 |
Q |
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|||||||||||| |||| ||||| |
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| T |
12789595 |
caagtatggttttgctaggtgac |
12789573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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