View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_low_10 (Length: 405)
Name: NF19093_low_10
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 27133925 - 27133537
Alignment:
| Q |
1 |
aataaaaagaaaattcacttatgttttgtcattaaatttcatttttcatgtttt-gaagagttcacttaacgaaacttccacatattaagtgtggagaaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||| ||||| |
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| T |
27133925 |
aataaaaagaaaattcacttatgttttgtcattaaatttcatttttcatgtttttgaagagttcacttaacgaaacttacacacattaaatgtgaagaaa |
27133826 |
T |
|
| Q |
100 |
ataaacgtagaaggtttgaactcacgtcaaatatctttcacannnnnnnatcatataatttgtacttaagagacactaaatttaattgtttttaacaatg |
199 |
Q |
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|||||||||| ||||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
27133825 |
ataaacgtagtaggtttgaactcaggtcaaatatctt-cacatttttttatcatataatttgttcttaagagacactaaatttaattgttttaaacaatg |
27133727 |
T |
|
| Q |
200 |
acattactaaattgttttgattgtttaacatttgagaagcaatagtgagaaaataatgatgaacatactaaatgaaattccattaaaacttatatttttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27133726 |
acattactaaattgttttgattgtttaacatttgagaagcaatagtgagacaataatgacgaacatactaaatgaaattccattaaaacttatatttttt |
27133627 |
T |
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| Q |
300 |
aaaaccacaatcaatttggctcaaaaatataaataaagagcacacaaaagtgagtttatagaatgtactctttagatctagcggtgcttg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27133626 |
aaaaccacaatcaatttggctcaaaaatataaataaagagcacacaaaagtgagtttatagaatgtactctttagatctagcggtgcttg |
27133537 |
T |
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