View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19093_low_16 (Length: 333)
Name: NF19093_low_16
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_low_16 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 5299045 - 5298739
Alignment:
| Q |
9 |
agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299045 |
agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg |
5298946 |
T |
|
| Q |
109 |
atctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagt |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5298945 |
atctaccggaagtaagattattgtgaccacacgtgacaaggaggtagcatcagttatgaagtccaccaaacttcttcatttgaagcaattgaagaagagt |
5298846 |
T |
|
| Q |
209 |
gaatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtg |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5298845 |
gaatgttggagtatgtttgtgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtg |
5298746 |
T |
|
| Q |
309 |
gagggtt |
315 |
Q |
| |
|
||||||| |
|
|
| T |
5298745 |
gagggtt |
5298739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 5250482 - 5250177
Alignment:
| Q |
10 |
gcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgga |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
5250482 |
gcagagactaacaggtaagaaatatcttcttgttttggatgatgtctggaatgggagtgtggaatgttgggagcgcttactacttcccttatgccatgga |
5250383 |
T |
|
| Q |
110 |
tctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtg |
209 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |||||||||| ||||| |||||||||||||||| ||| |||| || ||||| || |||||| |
|
|
| T |
5250382 |
tctactggaagtaaaattattgttacaacacgtaacaaggaggtggcatctatcatgaagtccaccaaggagcttaatttagagaaattgaaggagagtg |
5250283 |
T |
|
| Q |
210 |
aatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtgg |
309 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||| | ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||| |
|
|
| T |
5250282 |
aatgttggagtatgtttgtgagacatgctttttacggaaggaatgcaagtgaatatccaaatcttgaatctattggtaagaaaattataggcaagtgtgg |
5250183 |
T |
|
| Q |
310 |
agggtt |
315 |
Q |
| |
|
|||||| |
|
|
| T |
5250182 |
agggtt |
5250177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 5268370 - 5268064
Alignment:
| Q |
9 |
agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg |
108 |
Q |
| |
|
||||| |||||||||| |||||||| ||||| ||||||||||||||||||| || |||| |||||||||||||||||| ||||||| || | |||| |
|
|
| T |
5268370 |
agcagggactaacaggcaagaaatacttgctttttttggatgatgtctggaatgggagtgaagaatgttgggagcgcttattacttcccttattccatgg |
5268271 |
T |
|
| Q |
109 |
atctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagt |
208 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||| ||| | |||||||| | |||||||| ||||||||| ||| |||| || || || || ||||| |
|
|
| T |
5268270 |
atctgctggaagtaaaattattgtgacaacacgtaacatgaaggtagcaactgtcatgaactccaccaaaaaccttaatttagagaaactgaaggagagt |
5268171 |
T |
|
| Q |
209 |
gaatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtg |
308 |
Q |
| |
|
|||||||||||||||||| || |||| |||||||| || | |||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
5268170 |
gaatgttggagtatgtttgtgcgacatgcttttcatggaagcaatgcaagtgaatacccaaatcttgaatcaattggaaagaaaatagtagataagtgtg |
5268071 |
T |
|
| Q |
309 |
gagggtt |
315 |
Q |
| |
|
||||||| |
|
|
| T |
5268070 |
gagggtt |
5268064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 4388659 - 4388965
Alignment:
| Q |
16 |
actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc |
115 |
Q |
| |
|
|||||| || ||||||||| |||||||||| |||||||||||||| || | || |||| |||||||||||||||||||||| | | |||||||||| |
|
|
| T |
4388659 |
actaactggtaagaaatatttgcttgttttagatgatgtctggaatgggaatgaggaaggttgggagcgcttactacttcccctatgccatggatctact |
4388758 |
T |
|
| Q |
116 |
ggaagt------aagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtg |
209 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| |||| || || || | | |||| |
|
|
| T |
4388759 |
ggaagtggaagtaaaattattgtgacaactcgtgacaaggaggtagcatctatcatgaagtccaccaaggagcttaatttagagaaactgaatgaaagtg |
4388858 |
T |
|
| Q |
210 |
aatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtgg |
309 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
4388859 |
aatgttggagaatgtttgtgagacatgcttttcacggaaggaatgcaagtgagtatccaaatcttgtatcaattggcaagaaaattgtagataagtgtgt |
4388958 |
T |
|
| Q |
310 |
agggttt |
316 |
Q |
| |
|
||||||| |
|
|
| T |
4388959 |
agggttt |
4388965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 65 - 313
Target Start/End: Complemental strand, 5280939 - 5280691
Alignment:
| Q |
65 |
agtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtca |
164 |
Q |
| |
|
|||| |||||||||||| | ||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||| | |
|
|
| T |
5280939 |
agtggggaatgttgggaacagttactacttccctttaatcatggatcttttggaagtaagattattgtgaccacacgtgacaaagaggtagcagcagtaa |
5280840 |
T |
|
| Q |
165 |
tgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaata |
264 |
Q |
| |
|
|||| ||| || || | |||||||||||||||||||| | || || |||||| | | ||| ||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
5280839 |
tgaaatcctcccaaatagttcatttgaagcaattggaggaaagcgatggttggaatttatttgtgagacatgcttttcacggaaaaaatgcaagtgaata |
5280740 |
T |
|
| Q |
265 |
tccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggaggg |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| | |||||||||||| |
|
|
| T |
5280739 |
tccaaatcttgaatcaattgggaagaaaattgtaaacaagtgtggaggg |
5280691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 315
Target Start/End: Original strand, 8568690 - 8568969
Alignment:
| Q |
36 |
tgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgac |
135 |
Q |
| |
|
|||||||| | |||||| ||||||| || | || ||||| |||||||| ||||||||||| ||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
8568690 |
tgcttgttctagatgatatctggaatgggaatgaggaattttgggagcagttactacttccatttaatcatggatcttcaggaagtaagattattgtgac |
8568789 |
T |
|
| Q |
136 |
aacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatgagacac |
235 |
Q |
| |
|
||||||||||||| | || |||| ||||||||| || | | |||||||| |||||||||||| ||| || ||||||||| | ||| ||| ||| |
|
|
| T |
8568790 |
aacacgtgacaagcatgttgcattagtcatgaaatctgagcagcaacttcatttaaagcaattggaggagaaagattgttggagtttatttgtgaaacat |
8568889 |
T |
|
| Q |
236 |
gcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
|||||||| || | |||| ||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| |
|
|
| T |
8568890 |
gcttttcaaggaaagaatgtgtttgaatatccaaatcttgaatcgattggaaagaagattgtagaaaagtgtggagggtt |
8568969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 8590036 - 8589734
Alignment:
| Q |
16 |
actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc |
115 |
Q |
| |
|
||||||||| |||||||| |||||||||| || ||| |||||||||| | ||| ||||||||||||| ||||||||||| |||||| |||||| | | |
|
|
| T |
8590036 |
actaacaggcaagaaatacttgcttgttttagacgatatctggaacgggaatgcagaatgttgggagcagttactacttccctttaaccatggattttct |
8589937 |
T |
|
| Q |
116 |
ggaagtaagattattgtgacaacacgtgacaaggaggtagc--atca-gtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaat |
212 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||| |||| || | || |||||||| | || |||| | |||||||| || || || | |
|
|
| T |
8589936 |
ggaagtaagattgtcgtgacaacacgtgaaaaggaggtagcatatcatgttcttaaatccaccaagttatttgatttacaacaattggacaaaagcgatt |
8589837 |
T |
|
| Q |
213 |
gttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagg |
312 |
Q |
| |
|
|||||||| | ||| ||| ||| |||||||| || | |||| |||||||||||||||||||||||| |||||||||||| | || ||||||||||| |
|
|
| T |
8589836 |
gttggagtttatttgtgacacatgcttttcaaggaaagaatgtgtgtgaatatccaaatcttgaatcaactggcaagaaaatactggataagtgtggagg |
8589737 |
T |
|
| Q |
313 |
gtt |
315 |
Q |
| |
|
||| |
|
|
| T |
8589736 |
gtt |
8589734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 315
Target Start/End: Original strand, 6838633 - 6838922
Alignment:
| Q |
26 |
aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga |
125 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||| | || |||| |||||||| |||||||||||||||||| | |||||| | ||||||| |
|
|
| T |
6838633 |
aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaaga |
6838732 |
T |
|
| Q |
126 |
ttattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtt |
225 |
Q |
| |
|
|||||||||||||||| || || | ||||||||| | |||| || || || | || ||||||| ||||||||||||||||| |||||||| | || |
|
|
| T |
6838733 |
ttattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagtttatt |
6838832 |
T |
|
| Q |
226 |
tatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
| | || ||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
6838833 |
ttccacacttgcttttcacggcaaaaatgcaagcgaatacccaaaacttgaatcaattggcaaaaagattgtagataagtgtggagggtt |
6838922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 315
Target Start/End: Complemental strand, 6882746 - 6882537
Alignment:
| Q |
106 |
tggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaag |
205 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||||| ||||||||| ||||||||| |||||| |||||| || | || || |||||||||||| || |
|
|
| T |
6882746 |
tggatcttcaggaagtaagatgattgtgacaacacatgacaaggaagtagcatcaatcatgagatccacccggctaatacacttaaagcaattggaggag |
6882647 |
T |
|
| Q |
206 |
agtgaatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagt |
305 |
Q |
| |
|
||||| | ||||||| | ||| ||||| | |||||||| || | |||| | |||||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
6882646 |
agtgattcttggagtttatttgtgagatatgcttttcaaggtaggaatgtatttgaatatccaaatcttgaattgataggcaagaaaatagtagaaaagt |
6882547 |
T |
|
| Q |
306 |
gtggagggtt |
315 |
Q |
| |
|
|||| ||||| |
|
|
| T |
6882546 |
gtggggggtt |
6882537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 6736290 - 6736155
Alignment:
| Q |
23 |
ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta |
122 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||| || |||| |||| |||||||| |||||||||| |||||| |||||||| | ||||||| |
|
|
| T |
6736290 |
ggaaagaaatacttgcttgttttagatgatatctggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta |
6736191 |
T |
|
| Q |
123 |
agattattgtgacaacacgtgacaaggaggtagcat |
158 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6736190 |
aaattatcgtgacaacacgtgaaaaggaggtagcat |
6736155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 6947569 - 6947434
Alignment:
| Q |
23 |
ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta |
122 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||||||| ||| ||||||||||||| ||||| ||||| |||||| |||||||| | ||||||| |
|
|
| T |
6947569 |
ggaaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttccctttaaccatggatcttctggaagta |
6947470 |
T |
|
| Q |
123 |
agattattgtgacaacacgtgacaaggaggtagcat |
158 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| ||||| |
|
|
| T |
6947469 |
agattatcgtgacaactcgtgaaaaggaggcagcat |
6947434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 313
Target Start/End: Complemental strand, 8471858 - 8471571
Alignment:
| Q |
26 |
aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga |
125 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||| | || |||| |||||||| ||||||||||| |||||| |||||||| | ||||||| |
|
|
| T |
8471858 |
aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccctttaaccatggatcttctacgagtaaga |
8471759 |
T |
|
| Q |
126 |
ttattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtt |
225 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| | | |||| || || || | || ||||||| ||||||||||||||||| ||||||||| | || |
|
|
| T |
8471758 |
ttattgtgacaacacgcgacaaagaggtagcattaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgactgttggagtttatt |
8471659 |
T |
|
| Q |
226 |
tatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggaggg |
313 |
Q |
| |
|
| || | ||||||| |||| ||| || ||||| ||||||||||||||||||||||| || || ||||| |||||||||||| |
|
|
| T |
8471658 |
ttccagtcttgcttttcctggcaaaaaattgagcgaatacccaaatcttgaatcaattggcaaaaatattgtagataagtgtggaggg |
8471571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 6448504 - 6448646
Alignment:
| Q |
16 |
actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc |
115 |
Q |
| |
|
||||||| |||||||||| | |||||||| || || |||||||||| | ||| ||| ||||||||| |||| ||||| |||||| |||||||| | |
|
|
| T |
6448504 |
actaacaagaaagaaatactttcttgttttagacgacatctggaacgggaatgcagaacgttgggagcaggtactgcttccgtttaaccatggatcttct |
6448603 |
T |
|
| Q |
116 |
ggaagtaagattattgtgacaacacgtgacaaggaggtagcat |
158 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6448604 |
ggaagtaagattattgtgacaacacgtgaaaaggaggtagcat |
6448646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 315
Target Start/End: Complemental strand, 6265953 - 6265724
Alignment:
| Q |
86 |
ttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttc |
185 |
Q |
| |
|
|||||||||||| ||||| ||||||| | || ||||||| || |||||||||| ||||| |||||||| | ||| |||| ||||| ||| |||| |
|
|
| T |
6265953 |
ttactacttcctcttaaccgtggatcttctcgaggtaagatgatcgtgacaacacatgacagtgaggtagcgttagttatgagatccacacgactacttc |
6265854 |
T |
|
| Q |
186 |
atttgaagcaattggagaagagtgaatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattgg |
285 |
Q |
| |
|
|||| |||||||||||| ||||||| | ||||||| | ||| ||||| | |||||||| |||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
6265853 |
atttaaagcaattggaggagagtgactcttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttgaatatccaaatcttgaattgattgg |
6265754 |
T |
|
| Q |
286 |
caagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
||||||||| |||| ||| ||||| ||||| |
|
|
| T |
6265753 |
caagaaaatagtagcaaaatgtggggggtt |
6265724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 6554167 - 6554302
Alignment:
| Q |
23 |
ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta |
122 |
Q |
| |
|
||||||||||| |||||||||| |||||| | ||||| || |||| |||| |||||||| |||||||||| |||||| |||||||| | ||||||| |
|
|
| T |
6554167 |
ggaaagaaatacttgcttgttttagatgatatatggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta |
6554266 |
T |
|
| Q |
123 |
agattattgtgacaacacgtgacaaggaggtagcat |
158 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6554267 |
tgattatcgtgacaacacgtgaaaaggaggtagcat |
6554302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 6479711 - 6479846
Alignment:
| Q |
23 |
ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta |
122 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||||||| || | || || | |||||||| ||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
6479711 |
ggaaagaaatacttgcttgttttagatgatatctggaatgggaatgtagagtattgggagcagttactacttccatttaaccatggatcttttggaagta |
6479810 |
T |
|
| Q |
123 |
agattattgtgacaacacgtgacaaggaggtagcat |
158 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
6479811 |
agattatcgtgacaacacgtgaaaaggaggtggcat |
6479846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 8454951 - 8454824
Alignment:
| Q |
26 |
aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga |
125 |
Q |
| |
|
||||||||| |||||||||| || ||| |||||||||| ||||||| |||||||| ||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
8454951 |
aagaaatatttgcttgttttagacgatatctggaacggggatgcggaacgttgggagttgttactacttccctttaaccatggatcttttggaagtaaga |
8454852 |
T |
|
| Q |
126 |
ttattgtgacaacacgtgacaaggaggt |
153 |
Q |
| |
|
|| | |||||||||||||| |||||||| |
|
|
| T |
8454851 |
ttgtcgtgacaacacgtgagaaggaggt |
8454824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 315
Target Start/End: Complemental strand, 6142518 - 6142319
Alignment:
| Q |
116 |
ggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgtt |
215 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||||||| ||||| ||| | | ||||||||||||||||||||| ||||| | | || |
|
|
| T |
6142518 |
ggaagtaagatgattgtgacaacacatgacaaggaagtagcatcaagcatgagttccgctcggatacttcatttgaagcaattggaggagagtaactctt |
6142419 |
T |
|
| Q |
216 |
ggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
||||| | ||| ||||| | ||||||| || | |||| || ||||||||||||||||| || ||||||||||| |||||||||||||| ||||| |
|
|
| T |
6142418 |
ggagtttatttgtgagatatgcttttccaggtaggaatgtgtttggatatccaaatcttgaattgataggcaagaaaatagtagaaaagtgtggggggtt |
6142319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 309
Target Start/End: Original strand, 6591105 - 6591346
Alignment:
| Q |
68 |
gcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatga |
167 |
Q |
| |
|
||||||||||||||| |||||||||| |||| | |||||||| | ||||||||||| || |||||||| | ||||||||| ||||||||| ||||| |
|
|
| T |
6591105 |
gcggaatgttgggagatgctactacttccgtttagccatggatcttctggaagtaagatgatggtgacaacgcatgacaaggaagtagcatcaatcatgg |
6591204 |
T |
|
| Q |
168 |
agtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatcc |
267 |
Q |
| |
|
|||||| | || || |||| || ||||||||| ||||||| | ||||||| | ||| ||||| | ||||||| || | ||| ||||||||| |
|
|
| T |
6591205 |
gatccacccagctagttgatttaaatcaattggaggagagtgactcttggagtttatttgtgagatatgcttttcgaggtagggatgtgtttgaatatcc |
6591304 |
T |
|
| Q |
268 |
aaatcttgaatcaattggcaagaaaatcgtagaaaagtgtgg |
309 |
Q |
| |
|
|| ||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
6591305 |
aactcttgtattgataggcaagaaaatagtagaaaagtgtgg |
6591346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 6736052 - 6735995
Alignment:
| Q |
258 |
gtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || || |||||||||||||| |
|
|
| T |
6736052 |
gtgaatatccaaatcttgaatcaattgggaagaaaatagtggagaagtgtggagggtt |
6735995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 314
Target Start/End: Complemental strand, 6169108 - 6168925
Alignment:
| Q |
131 |
gtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatga |
230 |
Q |
| |
|
|||||||||| ||| || || || ||||||||||||| |||||| | | |||||||| | |||||||||| ||||||| | ||||||| | ||| | | |
|
|
| T |
6169108 |
gtgacaacacatgataaagaagttgcatcagtcatgagatccacccagatacttcatttaaggcaattggaggagagtgactcttggagtttatttgtaa |
6169009 |
T |
|
| Q |
231 |
gacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggt |
314 |
Q |
| |
|
|||| |||||| | |||| ||| ||||||||||||||||||||| ||||| | |||||| |||||||| ||||| |||| |
|
|
| T |
6169008 |
gacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattggtatgaaaatagtagaaaaatgtggggggt |
6168925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 6519954 - 6520025
Alignment:
| Q |
86 |
ttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagca |
157 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
6519954 |
ttactacttccgcttaaccatggatcttctggaagtaagattatcgtgacaacacgtgaaaagaaggtagca |
6520025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 6721852 - 6721942
Alignment:
| Q |
77 |
tgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatga |
167 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||| | ||||||||||| || ||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
6721852 |
tgggagcagttactacttctttttaaatgtggatcttcaggaagtaagatgatcgtgacaacacgggacaaggaagtagcatcaatcatga |
6721942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 6259288 - 6259232
Alignment:
| Q |
259 |
tgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
6259288 |
tgaatatccaaatcttgaatcgatcggcaagaaaatagtagaaaaatgtggggggtt |
6259232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 314
Target Start/End: Complemental strand, 6245504 - 6245321
Alignment:
| Q |
131 |
gtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatga |
230 |
Q |
| |
|
|||||||||| ||| || || || ||||||||||||| | |||| | | |||||||| | |||||||||| ||||||| | ||||||| | ||| | | |
|
|
| T |
6245504 |
gtgacaacacatgataaagaagttgcatcagtcatgagatacacccagatacttcatttaaggcaattggaggagagtgactcttggagtttatttgtaa |
6245405 |
T |
|
| Q |
231 |
gacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggt |
314 |
Q |
| |
|
|||| |||||| | |||| ||| ||||||||||||||||||||| ||||| | |||||| |||||||| ||||| |||| |
|
|
| T |
6245404 |
gacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattggtatgaaaatagtagaaaaatgtggggggt |
6245321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 315
Target Start/End: Complemental strand, 6917317 - 6917134
Alignment:
| Q |
132 |
tgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatgag |
231 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||| |||||| || ||| |||| |||||||| || |||||| ||| ||||| | ||| |||| |
|
|
| T |
6917317 |
tgacaacatatgacaaggaagtagcatcaatcatgagatccacccggctacttgatttaaagcaattagaagagagtggttgtaggagtttatttgtgag |
6917218 |
T |
|
| Q |
232 |
acacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
|| |||||||| | | ||||| ||| || |||||||||||||| |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
6917217 |
tcatgcttttcatgataggaatgcgagtcaacatccaaatcttgaaattattggcaagaaaatagtagacaaatgtggagggtt |
6917134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 6554405 - 6554462
Alignment:
| Q |
258 |
gtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| || || |||||||||||||| |
|
|
| T |
6554405 |
gtgaatatccaaatcttgaaacaattgggaggaaaatagtggacaagtgtggagggtt |
6554462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 7750088 - 7750032
Alignment:
| Q |
259 |
tgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
||||||||||||||| || || || ||||||||||| |||||||||||||| ||||| |
|
|
| T |
7750088 |
tgaatatccaaatctcgagtcgatcggcaagaaaatagtagaaaagtgtggggggtt |
7750032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 8454715 - 8454659
Alignment:
| Q |
259 |
tgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
|||||||||||||||||||||| |||| | ||||| || ||||||||||||||||| |
|
|
| T |
8454715 |
tgaatatccaaatcttgaatcagttggtagaaaaatagtggaaaagtgtggagggtt |
8454659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 315
Target Start/End: Complemental strand, 6900316 - 6900121
Alignment:
| Q |
120 |
gtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggag |
219 |
Q |
| |
|
||||||| ||||||||||||| ||| | ||| ||||||||| |||| | || || |||| |||||||| || |||||| || ||||||| |||||||| |
|
|
| T |
6900316 |
gtaagatgattgtgacaacacatgatatggaagtagcatcaatcataagatctacgcaactacttcatttaaaacaattgaaggagagtgattgttggag |
6900217 |
T |
|
| Q |
220 |
tatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
| | ||| ||| ||| || |||| || | ||| | | ||||||||||||||| |||| || ||||| |||| ||| ||||||||| |||||| |
|
|
| T |
6900216 |
tttatttgtgaaacatgcctttctaggaagaaaagtatttgaatatccaaatctggaattgataggcaaacaaatagtacaaaagtgtgaagggtt |
6900121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 7206 - 7501
Alignment:
| Q |
23 |
ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta |
122 |
Q |
| |
|
||||||||||| |||||||||| |||||| | ||||| || |||| |||| |||||||| |||||||||| |||||| |||||||| | ||||||| |
|
|
| T |
7206 |
ggaaagaaatacttgcttgttttagatgatatatggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta |
7305 |
T |
|
| Q |
123 |
agattattgtgacaacacgtgacaaggaggtagcatcagtcatg-----aagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttgg |
217 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||||| |||||| || || |||||| | || |||| | |||||||| || || | |||||| |
|
|
| T |
7306 |
aaattatcgtgacaacacgtgaaaaggaggtagcat--gtcatgttctaaaatcaaccaaattatttgatttacaacaattggaaaaaagcaattgttgg |
7403 |
T |
|
| Q |
218 |
agtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
|| | ||| ||| ||| |||||||| || | || || |||||||||||||||||||| ||||||| |||||||| || || |||||||||||||| |
|
|
| T |
7404 |
agattatttgtgacacatgcttttcaaggaaaaagtgtgtgtgaatatccaaatcttgaaacaattgggaagaaaatagtggacaagtgtggagggtt |
7501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 25242067 - 25242177
Alignment:
| Q |
204 |
agagtgaatgttggagtatgtttatgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaa---aatcgtaga |
300 |
Q |
| |
|
||||||| ||||||||| ||||| ||| || ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
25242067 |
agagtgattgttggagtgtgtttgagaggcatgcttttcacggaaggaatgcaagtgaatatccaaatcttgcatcaattggcaagaaaataatagtaga |
25242166 |
T |
|
| Q |
301 |
aaagtgtggag |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
25242167 |
aaagtgtggag |
25242177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 6573038 - 6573319
Alignment:
| Q |
34 |
tctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtg |
133 |
Q |
| |
|
|||||||||| | |||||||| ||||| || | || ||| |||| ||||| ||||||||| |||| ||| |||||| | ||||| |||||||||||| |
|
|
| T |
6573038 |
tctgcttgttctagatgatgtgtggaaagggaatgaggagtgtttggagcaattactactttctttcaaccatggatttttaggaagcaagattattgtg |
6573137 |
T |
|
| Q |
134 |
acaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttcttcatttgaagcaattggagaagagtgaatgttggagtatgtttatgagac |
233 |
Q |
| |
|
|||||||||||||| | || |||| |||||||| || | | | |||| ||| ||| | |||||| ||| || ||||||||| | ||| ||| || |
|
|
| T |
6573138 |
acaacacgtgacaaaaacgttgcattggtcatgaaatctgaccatcaacttcttttaaagaatttggaggagaaagattgttggagtttatttgtgaaac |
6573237 |
T |
|
| Q |
234 |
acgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggtt |
315 |
Q |
| |
|
| ||||||| || | ||||| ||| ||||||||||||||||| ||||||||| | || ||||| || ||||||||||| |
|
|
| T |
6573238 |
atgcttttcgaggaaaaaatgtgtttgactatccaaatcttgaatcgattggcaaggagattgtagacaaatgtggagggtt |
6573319 |
T |
|
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