View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_low_2 (Length: 541)
Name: NF19093_low_2
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Original strand, 46767883 - 46768419
Alignment:
| Q |
19 |
gtgtgaacttgagaacgcgtgcaatgcgcatgagaaatttgtcgaaagaatttacgtcagttatgaattttaatttgttgtgtttggttattgaataaca |
118 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46767883 |
gtgtgaacttgagaacccgtgcaatgcgcgtgagaaatttgtcgaaagaatttacgtcagttatgaattttaatttgttgtgtttggttattgaataaca |
46767982 |
T |
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| Q |
119 |
aaaacacttaacagtaaatcagtaaatcacagtatcacaatagacatacatcagtgttgtctgtcaactgttaaatacaccttttataaaactaaacata |
218 |
Q |
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| T |
46767983 |
aaaacacttaacagtaaatcagtaaatcacagtatcacaagagacatacatcagtgttgtctgtcaactgttaaatacaccttttataaaactaaacata |
46768082 |
T |
|
| Q |
219 |
acatcaaaacacaacaataatatttaagaagaaaatgtggatacataacatgcaatatcaaaaaattagttgtgtaatactaactggttactaaatatgt |
318 |
Q |
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| T |
46768083 |
acatcaaaacacaacaataatatttaagaagaaaatgtggatacataacatgcaatatcaaaaaattagttgtgtaatactaactggttactaaatatgt |
46768182 |
T |
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| Q |
319 |
cacaatgcatacagccaacagaagttactggtgaggactgaggagggtaaactaagtgctctgcaatccacaataattacttcagggtattgttttaaaa |
418 |
Q |
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| T |
46768183 |
cacaatgcatacagccaacagaagttactggtgaggactgaggagggtaaactaagtgctctgcaatccacaataattacttcagggtattgttttaaaa |
46768282 |
T |
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| Q |
419 |
gcattttcat----------------------aaatgtgatgtgatgatgggagttagaggtggcttagctttggtgttcagaattgggagtttagtctt |
496 |
Q |
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| T |
46768283 |
gcattttcataaaaagagagataattgtacacaaatgtgatgtgatgataggagttagaggtggcttagctttggtgttcaggattgggagtttagtctt |
46768382 |
T |
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| Q |
497 |
gaggnnnnnnnnnctttgggggtgagtagtgatgatg |
533 |
Q |
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| T |
46768383 |
gagggttttttttctttgggggtgagtagtgacgatg |
46768419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 265
Target Start/End: Original strand, 35045656 - 35045775
Alignment:
| Q |
144 |
atcacagtatcacaatagacatacatcagtgttgtctgtcaactgttaaatacaccttttataaaactaaacataacatcaaaacacaacaataatattt |
243 |
Q |
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|||||| || |||| ||||| ||||||| |||||||| |||||| ||| || ||||||||||||||||||| |||||||||||||||||| || ||| |
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| T |
35045656 |
atcacaataacacattagacttacatcaatgttgtct--caactggtaagtagctcttttataaaactaaacatcacatcaaaacacaacaatgatgttt |
35045753 |
T |
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| Q |
244 |
aagaagaaaatgtggatacata |
265 |
Q |
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|||| | |||||| ||||||| |
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| T |
35045754 |
tagaaaacaatgtgaatacata |
35045775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 31527756 - 31527846
Alignment:
| Q |
142 |
aaatcacagtatcacaatagacatacatcagtgttgtctgtcaactgttaaatacaccttttataaaactaaacataacatcaaaacacaa |
232 |
Q |
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| T |
31527756 |
aaatcacagtatcacattagacatacatccctgtggtgtatcatttgtgaagtacatcttttataaaactacacaaaacatcaaaacacaa |
31527846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 31719694 - 31719642
Alignment:
| Q |
50 |
gagaaatttgtcgaaagaatttacgtcagttatgaattttaatttgttgtgtt |
102 |
Q |
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| T |
31719694 |
gagaaatttgttgaaagaatctacgctagttatgagttataatttgttgtgtt |
31719642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 40161106 - 40161150
Alignment:
| Q |
199 |
cttttataaaactaaacataacatcaaaacacaacaataatattt |
243 |
Q |
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| T |
40161106 |
cttttataaagctaaagataacatcaaaacacatcaataatattt |
40161150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 28843296 - 28843235
Alignment:
| Q |
182 |
tcaactgttaaatacaccttttataaaactaaacataacatcaaaacacaacaataatattt |
243 |
Q |
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| T |
28843296 |
tcaactgttaagtacctcttttataaatctaaacataatattaaaacacatctataatattt |
28843235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 43538958 - 43539041
Alignment:
| Q |
200 |
ttttataaaactaaacataacatcaaaacacaacaataatatttaagaagaaaatgtggatacataacatgcaatatcaaaaaa |
283 |
Q |
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||||||||| ||||| |||||| |||||||| ||||||| |||||||| |||||| || ||||| |||| ||||||||||| |
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| T |
43538958 |
ttttataaagctaaatataacaccaaaacacgtcaataatgtttaagaaagcaatgtgaatccataatatgctatatcaaaaaa |
43539041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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