View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_low_22 (Length: 252)
Name: NF19093_low_22
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 3510348 - 3510569
Alignment:
| Q |
13 |
atacttgtatctctcaaacatttattattccaatttaattacctcaaaagcattatacatttgttgacccaatttagcattgatttcactcactccattc |
112 |
Q |
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| T |
3510348 |
atacttgtatcactcacacacttgttattccaatttaattacctcaaaagcgttatacatttgttgacccaatttagcattgatttcactcactccattc |
3510447 |
T |
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| Q |
113 |
tatattaacttgttatatacactacaagttaaattggaattaaaagcgttactccatgctaaattactggaaacgagttcatattaatccattcaatgat |
212 |
Q |
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| T |
3510448 |
tatattaacttgttatatacactacaagttaaattggaattaaaagc-ttactccatgctaaattactggaaacgagttcatattattccattcaatgat |
3510546 |
T |
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| Q |
213 |
aaaacaatttgaatttacatttg |
235 |
Q |
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| T |
3510547 |
aaaacaatttgaatttacatttg |
3510569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 27076920 - 27077036
Alignment:
| Q |
13 |
atacttgtatctctcaaacatttattattccaattta---attacctcaaaagcattatacatttgttgacccaatttagcattgatttcactcactcca |
109 |
Q |
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| T |
27076920 |
atacttgtatctctcacacacttgttattccaatttactaattacctcaaaagcgttacgcatttgttgacccaatttagcactgatttcactcactcca |
27077019 |
T |
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| Q |
110 |
ttctatattaacttgtt |
126 |
Q |
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| T |
27077020 |
ttctatattaacttgtt |
27077036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 27077170 - 27077291
Alignment:
| Q |
118 |
taacttgttatatac-actacaa-gttaaattggaattaaaagcgttactccatgctaaattactggaaacgagttcatattaatccattcaatga--ta |
213 |
Q |
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| T |
27077170 |
taacttgttatatagtactacaaagttaaattggaattaaaagcgttactccatgctaaattactggaaatgagttcatattattccattaactgatcta |
27077269 |
T |
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| Q |
214 |
aaacaatttgaatttacatttg |
235 |
Q |
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|||| |||||||| |||||||| |
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| T |
27077270 |
aaacgatttgaatatacatttg |
27077291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 5952579 - 5952722
Alignment:
| Q |
37 |
ttattccaatttaattacctcaaaagcattatacatttgttgacccaatttagcattgatttcactcactccattcta---tattaacttgttatataca |
133 |
Q |
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| T |
5952579 |
ttattccaatttaattacctcaaaagcgttacacatttgttgacccaatttagcattgatttcactcactccattctatattattaacttgttatat--a |
5952676 |
T |
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| Q |
134 |
ctacaagttaaattggaattaaaagcgttactccatgctaaattac |
179 |
Q |
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| T |
5952677 |
gtacaagttaaattggaattaaaagtgttactccatgctaaattac |
5952722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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