View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_low_23 (Length: 246)
Name: NF19093_low_23
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 52111757 - 52111971
Alignment:
| Q |
32 |
ggacttgtgtcacttgatccaataatttaagaaataaagatgattgaaaatattctttgaaccttctataaaaggtagcaatgattgccaatgattggtg |
131 |
Q |
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| T |
52111757 |
ggacttgtgtgacttgatccaataatttaagaaataaagatgattgaaaatattctttgaaccttctataaaagggagcaatgattgccaatgattggtg |
52111856 |
T |
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| Q |
132 |
tgacacaatattttagagtaatggtctgaagcacttgtaccttttcttctatcttccagcactatttcccctttccaagggatgaggattctctcatgtt |
231 |
Q |
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| T |
52111857 |
cgacacaatattttagagtaatggtctgaagcacttgtaccttttcttctatcttctagcactatttcccctttccaagggatgaggattctctcatgtt |
52111956 |
T |
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| Q |
232 |
gaaatcaacatgagg |
246 |
Q |
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| T |
52111957 |
gaaatcaacatgagg |
52111971 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 1770188 - 1770273
Alignment:
| Q |
32 |
ggacttgtgtcacttgatccaataatttaagaaataaagatgattgaaaatattctttgaaccttctataaaaggtagcaatgatt |
117 |
Q |
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| T |
1770188 |
ggacatgtgtcaattgatccaacaattaaggaaataaagctaagagaaaatattctttgaaccctctataaaaggaagaaatgatt |
1770273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 44392617 - 44392584
Alignment:
| Q |
211 |
ggatgaggattctctcatgttgaaatcaacatga |
244 |
Q |
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| T |
44392617 |
ggattaggattctctcatgttgaaatcaacatga |
44392584 |
T |
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