View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_low_26 (Length: 237)
Name: NF19093_low_26
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9497783 - 9497561
Alignment:
| Q |
1 |
aatctgaataagatgatctgatacacacgtcagattaaccattataatgcctacccagttagaaacaacataccaaattttacccnnnnnnngcacaatt |
100 |
Q |
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| T |
9497783 |
aatctgaataagatgatctgatacacacgtcagattaaccgttataatgcctacccagttagaaacaacataccaaattttacccaaaaaaagcacaatt |
9497684 |
T |
|
| Q |
101 |
cagaaacaaatggtccacatcctctgtattgctacatccacccgcacagagttatcatatatacaaggattgtcgttttctaccagacaatcaactaaac |
200 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9497683 |
cagaaacaaatggtccacatcctcagtattgcaacatccacccgcacagagttatcatatatacaaggattgtcgttttctagcagacaatcaactaaac |
9497584 |
T |
|
| Q |
201 |
ttataattaaaaacaatagtttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
9497583 |
ttataattaaaaacaatagtttg |
9497561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 29540177 - 29540132
Alignment:
| Q |
168 |
gattgtcgttttctaccagacaatcaactaaacttataattaaaaa |
213 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
29540177 |
gattgtcgttttctactagacaatttactaaacttataattaaaaa |
29540132 |
T |
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