View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19093_low_3 (Length: 498)

Name: NF19093_low_3
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19093_low_3
NF19093_low_3
[»] chr1 (11 HSPs)
chr1 (11-349)||(16442604-16442942)
chr1 (11-310)||(16427049-16427348)
chr1 (13-263)||(16438418-16438665)
chr1 (329-418)||(16426279-16426368)
chr1 (11-178)||(16417564-16417731)
chr1 (11-280)||(16416163-16416429)
chr1 (22-280)||(16499580-16499838)
chr1 (369-418)||(16442555-16442604)
chr1 (330-403)||(23431728-23431801)
chr1 (330-407)||(32740708-32740785)
chr1 (332-376)||(5230478-5230522)
[»] chr4 (3 HSPs)
chr4 (330-404)||(658648-658722)
chr4 (330-405)||(54305516-54305591)
chr4 (330-404)||(49487508-49487581)
[»] chr8 (4 HSPs)
chr8 (330-403)||(27401685-27401758)
chr8 (330-404)||(15850683-15850757)
chr8 (330-403)||(44502153-44502226)
chr8 (344-404)||(26915295-26915354)
[»] chr7 (6 HSPs)
chr7 (330-405)||(27616185-27616260)
chr7 (330-404)||(45216142-45216214)
chr7 (330-404)||(43837448-43837522)
chr7 (344-404)||(44572654-44572714)
chr7 (361-398)||(9730159-9730196)
chr7 (352-404)||(8799619-8799671)
[»] chr2 (2 HSPs)
chr2 (330-404)||(32201050-32201124)
chr2 (330-404)||(9929492-9929566)
[»] chr6 (6 HSPs)
chr6 (337-402)||(12843766-12843831)
chr6 (330-403)||(34011378-34011451)
chr6 (330-380)||(2601975-2602025)
chr6 (330-404)||(19294244-19294320)
chr6 (352-404)||(2386764-2386816)
chr6 (344-404)||(7625066-7625126)
[»] chr5 (2 HSPs)
chr5 (358-405)||(32676883-32676930)
chr5 (359-404)||(39732276-39732321)
[»] chr3 (4 HSPs)
chr3 (330-404)||(43922170-43922244)
chr3 (359-404)||(7210339-7210384)
chr3 (351-404)||(24205103-24205156)
chr3 (358-402)||(10516364-10516408)
[»] scaffold0504 (1 HSPs)
scaffold0504 (358-406)||(8783-8831)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 16442942 - 16442604
Alignment:
Q  11 cagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaagatag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  16442942 cagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaaggttttttgagcaagatag 16442843  T
Q  111 tgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctattacatacatctgatccaattacttggaaagat 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16442842 tgaggtcaaaaagaaatattacactcgtgaaagaaaaccctttgtgtataatagtaattataatctattacatacatctgatccaattacttggaaagat 16442743  T
Q  211 accttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtacttttcaacaatgtaatgaatccctaatgtatact 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16442742 accttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtacttttcaacaatgtaatgaatccctaatgtatact 16442643  T
Q  311 tgttaatgttattctacactttttacattaacagtgttg 349  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  16442642 tgttaatttaattctacactttttacattaacagtgttg 16442604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 16427348 - 16427049
Alignment:
Q  11 cagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaagatag 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  16427348 cagagatatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagtttttttgagcaagatag 16427249  T
Q  111 tgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctattacatacatctgatccaattacttggaaagat 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||    
T  16427248 tgaggtcaaaaagaaatattacactcgtgaaagaaaaccctttgtgtataatagtaattataatcttctatatacatctgatccaattacttggaaagat 16427149  T
Q  211 accttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtacttttcaacaatgtaatgaatccctaatgtatact 310  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16427148 accttcctttgtaacagggctcctaatccccccaaaccagaagaccttccagctgtatgcaggtacttttcaacaatgtaatgaatccctaatgtatact 16427049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 16438418 - 16438665
Alignment:
Q  13 gagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaagatagtg 112  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||    
T  16438418 gagacatttgggttttttcagattgtaaatcatggcatcccagtgagtactttgaatgaaatgaaagatggggtggtaagtttttttgagcaagatagtg 16438517  T
Q  113 aggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctattacatacatctgatccaattacttggaaagatac 212  Q
    |||| |||||| ||| ||||||||| |||  || | ||||| ||||||||||||| | ||||||||   | || || | |||||  | ||||||||||||    
T  16438518 aggtaaaaaaggaattttacactcgcgaacaaagaccctttatgtataatagtaactttaatctat---acacctcagctccaaccagttggaaagatac 16438614  T
Q  213 cttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagc 263  Q
     ||| | || ||| ||||||||||||| ||||||||||||||||| |||||    
T  16438615 tttcttatgcaacatggctcctaatccacctaaaccagaagacctgccagc 16438665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 329 - 418
Target Start/End: Complemental strand, 16426368 - 16426279
Alignment:
Q  329 ctttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatagcttgattctgacct 418  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||||    
T  16426368 ctttttacattaacggtgttgacgtgtccgtgtcagtgttgtgtcagatgtccgtgtcaaagtccgtgcttcctagcttgattatgacct 16426279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 16417731 - 16417564
Alignment:
Q  11 cagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaagatag 110  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||| |  |||| |||||||||||   |||       |||||||||||    
T  16417731 cagagacatttgggttttttcagattgtaaatcatggcatcccactgagtactttggagaaaattaaagatggggtaaaaagtttctttgagcaagatag 16417632  T
Q  111 tgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctat 178  Q
    |||||| |||||||||| |||||||||||||   | | | ||| ||||||||||||||| ||||||||    
T  16417631 tgaggtaaaaaagaaattttacactcgtgaacatagaccttttctgtataatagtaattttaatctat 16417564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 16416429 - 16416163
Alignment:
Q  11 cagagacatttggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaagatag 110  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||  |||       |||||||||||    
T  16416429 cagagacatttgggttttttcagattgtaaatcatggcattccagtgagtactttggaggaaatgaaagatggggtgaaaagtttttttgagcaagatag 16416330  T
Q  111 tgaggtcaaaaagaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctat-tacatacatctgatccaattacttggaaaga 209  Q
    ||||||||| ||| ||| ||| || ||||||   ||| | ||| || || ||||||||  |  ||||| |||   || | | | |   ||||||||||||    
T  16416329 tgaggtcaagaaggaattttatacacgtgaacataaaccttttatgcattatagtaatattgctctatatac-cgcaccagctgc---tacttggaaaga 16416234  T
Q  210 taccttcctttgtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtactttt 280  Q
    | | |||||||| ||| ||||||||| ||||||||||||||||||||| |||| | |||||||||| ||||    
T  16416233 ttctttcctttgcaacatggctcctattccccctaaaccagaagacctgccagttgtatgcaggtaatttt 16416163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 16499580 - 16499838
Alignment:
Q  22 ggatttttccagattgtaaatcatggcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagnnnnnnngagcaagatagtgaggtcaaaa 121  Q
    |||||||| |||||||| |||||| |||||| ||||||||  ||||| |||||||||||||| ||||| ||       |||||||||||||||||||| |    
T  16499580 ggattttttcagattgtgaatcatagcatccaagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaagatagtgaggtcaaga 16499679  T
Q  122 agaaatattacactcgtgaaagaaaatcctttgtgtataatagtaattataatctat-tacatacatctgatccaattacttggaaagataccttccttt 220  Q
    || ||| ||| ||||||||   |||| | ||| ||||||||||||||| |  ||||| ||| | ||   | | ||| || |||||||||| | ||||| |    
T  16499680 aggaattttatactcgtgagcaaaaaccttttatgtataatagtaattttgctctatatacct-cacaagcttcaactaattggaaagattctttcctct 16499778  T
Q  221 gtaacttggctcctaatccccctaaaccagaagaccttccagctatatgcaggtactttt 280  Q
      ||| || ||||||||||||||||||||||||| || |||| | |||||||||| ||||    
T  16499779 acaacatgtctcctaatccccctaaaccagaagatctcccagttgtatgcaggtaatttt 16499838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 16442604 - 16442555
Alignment:
Q  369 gtgtcagatgtccgtgtcagagtccgtgcttcatagcttgattctgacct 418  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  16442604 gtgtcagatgcccgtgtcagagtccgtgcttcatagcttgattatgacct 16442555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 23431801 - 23431728
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcata 403  Q
    |||||||| || ||||||||| |||| |||||||||||||| |||| |||||||||| |||||| |||||||||    
T  23431801 tttttacactaccagtgttgaagtgtttgtgtcagtgtcgtatcaggtgtccgtgtcggagtccatgcttcata 23431728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 32740785 - 32740708
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatagctt 407  Q
    |||||||||||| ||||| ||  || | |||||||||||||||||||||| ||||||  |||| ||||||||||||||    
T  32740785 tttttacattaatagtgtcgatatgaccgtgtcagtgtcgtgtcagatgttcgtgtcgaagtctgtgcttcatagctt 32740708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 5230478 - 5230522
Alignment:
Q  332 tttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcaga 376  Q
    |||||||||||| |||||  ||||||||||| |||||||||||||    
T  5230478 tttacattaacattgttggtgtgtctgtgtctgtgtcgtgtcaga 5230522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 658648 - 658722
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||||||||| |||||||||||| || |||||||||||||||| | ||||| |||| |||||||||||||||||    
T  658648 tttttacattagcagtgttgacgtatccgtgtcagtgtcgtgtcgggtgtccatgtcggagtccgtgcttcatag 658722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 54305591 - 54305516
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatagc 405  Q
    ||||||||||| |  ||| |||||||| |||||||||| ||||||| |||||||||  |||||| |||||||||||    
T  54305591 tttttacattagcgatgtcgacgtgtccgtgtcagtgttgtgtcaggtgtccgtgttggagtccatgcttcatagc 54305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 49487508 - 49487581
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||||||||| |||| | ||||||||| |||||||||| |  ||  |||||||||| |||||||||||||||||    
T  49487508 tttttacattagcagtatcgacgtgtctttgtcagtgtcctagcaagtgtccgtgtc-gagtccgtgcttcatag 49487581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 27401758 - 27401685
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcata 403  Q
    ||||||||||| | |||||| |||||| ||||||||||| | |||| |||||||||||||||| ||||||||||    
T  27401758 tttttacattagcggtgttggcgtgtccgtgtcagtgtcctatcaggtgtccgtgtcagagtctgtgcttcata 27401685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 15850683 - 15850757
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    |||||||| ||||||||| || |||||  | ||||||||||||||| |||||||||| |||||| || |||||||    
T  15850683 tttttacactaacagtgtcgaagtgtccatatcagtgtcgtgtcaggtgtccgtgtcggagtccatgtttcatag 15850757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 44502226 - 44502153
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcata 403  Q
    ||||||||||| || ||| |||| |||||| |||||||||||| || ||||||| || || ||| |||||||||    
T  44502226 tttttacattagcaatgtcgacgcgtctgtatcagtgtcgtgttaggtgtccgtatcggaatccatgcttcata 44502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 26915295 - 26915354
Alignment:
Q  344 gtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    |||| |||||||| ||||||||||||| || | |||||||||||| |||||||||| ||||    
T  26915295 gtgtcgacgtgtccgtgtcagtgtcgtttcgg-tgtccgtgtcagtgtccgtgctttatag 26915354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 27616260 - 27616185
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatagc 405  Q
    ||||||||||||| |||| ||| |||| |||||||| ||||||||| ||| |||||| |||||| |||||||||||    
T  27616260 tttttacattaacggtgtcgacatgtccgtgtcagtatcgtgtcaggtgtacgtgtcggagtccatgcttcatagc 27616185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 45216142 - 45216214
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||||||||| | |||| |||||||| |||||||||||||||||| |||||||||  |||||| ||||||||||    
T  45216142 tttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgtccgtgt--gagtccatgcttcatag 45216214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 43837448 - 43837522
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||||||||| |||||| || ||||| |||||||||| |||| || |||| | ||||||||| |||||||||||    
T  43837448 tttttacattagcagtgtcgaggtgtccgtgtcagtgttgtgtaaggtgtctgcgtcagagtctgtgcttcatag 43837522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 44572654 - 44572714
Alignment:
Q  344 gtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    |||| ||||| || ||||||||||||||||||  ||||||||| |||||| ||||||||||    
T  44572654 gtgtcgacgtatccgtgtcagtgtcgtgtcaggagtccgtgtcggagtccatgcttcatag 44572714  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 9730159 - 9730196
Alignment:
Q  361 tcagtgtcgtgtcagatgtccgtgtcagagtccgtgct 398  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  9730159 tcagtgtcgtgtcagatctccgtgtcggagtccgtgct 9730196  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 8799671 - 8799619
Alignment:
Q  352 gtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||| |||| ||||||||||||| |||||||||| |||||| ||| ||||||    
T  8799671 gtgtccgtgtaagtgtcgtgtcaggtgtccgtgtcggagtccatgcgtcatag 8799619  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 32201050 - 32201124
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||||||||| | |||| |||||||| |||||||||||||||||| ||| |||||  |||||| ||||||||||    
T  32201050 tttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgttcgtgttggagtccatgcttcatag 32201124  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 9929566 - 9929492
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||||||||| | |||| |||||||| |||||||||||||||||  |||  |||||  ||||| ||||||||||    
T  9929566 tttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaagtgtttgtgtcgtagtccatgcttcatag 9929492  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 12843831 - 12843766
Alignment:
Q  337 attaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcat 402  Q
    |||| |||||| ||||||| ||||||||||||||||||  |||||||||| |||||| ||||||||    
T  12843831 attagcagtgtcgacgtgtttgtgtcagtgtcgtgtcaagtgtccgtgtcggagtccatgcttcat 12843766  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 34011378 - 34011451
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcata 403  Q
    ||||||||||| | | || |||||||| |||||||||| ||||||  ||||||||||| ||||| |||||||||    
T  34011378 tttttacattagcggcgtcgacgtgtccgtgtcagtgttgtgtcacgtgtccgtgtcaaagtccatgcttcata 34011451  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 2602025 - 2601975
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtc 380  Q
    |||||||||||||||||| |||||||| |||| | ||||||||||| ||||    
T  2602025 tttttacattaacagtgtcgacgtgtccgtgtaactgtcgtgtcaggtgtc 2601975  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 19294320 - 19294244
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtg--tcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||||||||| | |||| || ||||  ||||||||||||||  |||| ||||| ||||||||||| ||||||||||    
T  19294320 tttttacattagcggtgtcgatgtgttcgtgtcagtgtcgtgcgtcaggtgtccatgtcagagtccatgcttcatag 19294244  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 2386764 - 2386816
Alignment:
Q  352 gtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||| ||||| |||||||||| ||||||| ||||||  ||||||||||||||    
T  2386764 gtgtcagtgtctgtgtcgtgtctgatgtccatgtcagtatccgtgcttcatag 2386816  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 7625126 - 7625066
Alignment:
Q  344 gtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    |||| |||||||| ||||| |||||||||| ||||||||||||   |||||||||| ||||    
T  7625126 gtgtcgacgtgtcggtgtctgtgtcgtgtccgatgtccgtgtctatgtccgtgctttatag 7625066  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 405
Target Start/End: Original strand, 32676883 - 32676930
Alignment:
Q  358 gtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatagc 405  Q
    |||||||||||||||||| |||||||||| |||||| |||||||||||    
T  32676883 gtgtcagtgtcgtgtcaggtgtccgtgtcggagtccatgcttcatagc 32676930  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 39732276 - 39732321
Alignment:
Q  359 tgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    ||||||||||||||||| ||| |||||| |||||| ||||||||||    
T  39732276 tgtcagtgtcgtgtcaggtgttcgtgtcggagtccatgcttcatag 39732321  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 43922170 - 43922244
Alignment:
Q  330 tttttacattaacagtgttgacgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    |||||||| || | |||| || ||||| |||||||||||||||||| | || ||||| |||||| ||||||||||    
T  43922170 tttttacactagcggtgtcgaagtgtccgtgtcagtgtcgtgtcaggtatctgtgtcggagtccatgcttcatag 43922244  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 7210384 - 7210339
Alignment:
Q  359 tgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    |||||||||||||| || ||||||||| ||| ||||||||||||||    
T  7210384 tgtcagtgtcgtgttaggtgtccgtgttagaatccgtgcttcatag 7210339  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 24205103 - 24205156
Alignment:
Q  351 cgtgtctgtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatag 404  Q
    |||||| ||||| |||||||||| | |||||||||| | |||||||||||||||    
T  24205103 cgtgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 24205156  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 10516364 - 10516408
Alignment:
Q  358 gtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcat 402  Q
    |||| ||||||||||||||| ||| ||||||||||| ||||||||    
T  10516364 gtgttagtgtcgtgtcagatatccatgtcagagtccatgcttcat 10516408  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 8783 - 8831
Alignment:
Q  358 gtgtcagtgtcgtgtcagatgtccgtgtcagagtccgtgcttcatagct 406  Q
    |||||||||||||||| | |||||||||  | |||||||||||||||||    
T  8783 gtgtcagtgtcgtgtccggtgtccgtgtatgtgtccgtgcttcatagct 8831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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