View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19093_low_32 (Length: 206)

Name: NF19093_low_32
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19093_low_32
NF19093_low_32
[»] chr8 (1 HSPs)
chr8 (1-206)||(42005787-42005993)
[»] chr1 (2 HSPs)
chr1 (1-133)||(49171825-49171955)
chr1 (2-50)||(2899913-2899961)
[»] chr5 (2 HSPs)
chr5 (1-131)||(10018951-10019080)
chr5 (9-70)||(5547835-5547896)
[»] chr3 (3 HSPs)
chr3 (1-89)||(33819360-33819448)
chr3 (1-52)||(16970448-16970499)
chr3 (1-55)||(16240393-16240447)
[»] chr4 (2 HSPs)
chr4 (1-132)||(16542922-16543053)
chr4 (9-69)||(133997-134057)
[»] chr6 (3 HSPs)
chr6 (2-133)||(29816598-29816726)
chr6 (1-36)||(1881931-1881966)
chr6 (1-50)||(33691502-33691551)
[»] chr7 (3 HSPs)
chr7 (1-75)||(49076388-49076458)
chr7 (5-52)||(32057332-32057379)
chr7 (7-51)||(26798757-26798801)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42005993 - 42005787
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtattttgactccgccttttattaagtggtagttctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  42005993 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagctgactctattggtattttgactccgccttttattaaatggtagttctc 42005894  T
Q  101 tcttttttct-ggggctaaggccctcttgttatcnnnnnnngaaaataattttaaaggatacaaatcgatcgtaagaaaataattggcatttaactacca 199  Q
    | |||||| | |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42005893 ttttttttttgggggctaaggccctcttgttatcaaaaaaagaaaataattttaaaggatacaaatcgatcgtaagaaaataattggcatttaactacca 42005794  T
Q  200 aaaagtt 206  Q
    |||||||    
T  42005793 aaaagtt 42005787  T

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Target: chr1 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 49171825 - 49171955
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtattttgactccgccttttattaagtggtagttctc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||||   |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  49171825 ctttgatgttatatgagcattgtcgtgctcaaattaatttgtta-ctttaattgactctattggtatttcgattccgcattttgttaagtggtagttctc 49171923  T
Q  101 tcttttttctggggctaaggccctcttgttatc 133  Q
    |||||||||  ||||||||||||||||||||||    
T  49171924 tcttttttc-cgggctaaggccctcttgttatc 49171955  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 2899961 - 2899913
Alignment:
Q  2 tttgatgttatatgagcattgtcctgctcaaattaatttgttattttta 50  Q
    |||||| ||||||||||||||| |||||||||||| | |||||||||||    
T  2899961 tttgatattatatgagcattgtactgctcaaattagtatgttattttta 2899913  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10018951 - 10019080
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtattttgactccgccttttattaagtggtagttctc 100  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||| ||||| || | | |||    
T  10018951 ctttgatgttatatgaacattgtcctactcaaattaatttgttatttttagctgactctattagtatttcgactccgcgttttgttaagcggcaatcctc 10019050  T
Q  101 tcttttttctggggctaaggccctcttgtta 131  Q
    |||||||| | ||||||||||||||||||||    
T  10019051 tctttttt-ttgggctaaggccctcttgtta 10019080  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 5547835 - 5547896
Alignment:
Q  9 ttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtatttt 70  Q
    |||||||||||||||||||||||||||| ||||||| | ||||| || ||||||||||||||    
T  5547835 ttatatgagcattgtcctgctcaaattagtttgttaatgttagctgattctattggtatttt 5547896  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33819448 - 33819360
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtattttgactccgccttttattaag 89  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||  ||||||| |||| |||||    
T  33819448 ctttgatgttatatgagcattgtcctgctaaaattaatttgttatttttagctgactctattagtatttcaactccgcattttgttaag 33819360  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16970499 - 16970448
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagc 52  Q
    |||||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  16970499 ctttgatgttatatgagcattgtcctgctcaaattagtatgttgtttttagc 16970448  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16240447 - 16240393
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagccga 55  Q
    |||||||||||||| |||||||||| ||||| |||||||| || |||||| ||||    
T  16240447 ctttgatgttatataagcattgtccagctcagattaatttattgtttttaaccga 16240393  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 16542922 - 16543053
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtattttgactccgccttttattaagtggtagttctc 100  Q
    ||||||||||||||||||||| || ||||||||||||||| |||||||| ||  ||||  ||||||||| |||||    |||| ||| | ||| |||||     
T  16542922 ctttgatgttatatgagcattatcttgctcaaattaatttattatttttggctaactccgttggtatttcgactctatgttttgttatgcggttgttcta 16543021  T
Q  101 tcttttttctggggctaaggccctcttgttat 132  Q
    |||||||| |||||||||||||||||||||||    
T  16543022 tcttttttttggggctaaggccctcttgttat 16543053  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 133997 - 134057
Alignment:
Q  9 ttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtattt 69  Q
    ||||| ||||||| |||||||||||||| ||||||| | ||||| || |||||||||||||    
T  133997 ttatacgagcattatcctgctcaaattagtttgttaatgttagctgattctattggtattt 134057  T

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Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 29816726 - 29816598
Alignment:
Q  2 tttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtattttgactccgccttttattaagtggtagttctct 101  Q
    ||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| |||| ||| ||||||| |||| |||  ||| ||||| |||||||||||    
T  29816726 tttgatgttatatgagcattgtcttgctcaattta-tttattatttttagctgactttatcggtatttcgactgcgcaatttgttaagcggtagttctct 29816628  T
Q  102 cttttttctggggctaaggccctcttgttatc 133  Q
    || |||||| |||||||||| ||||| |||||    
T  29816627 ct-ttttct-gggctaaggctctctttttatc 29816598  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1881966 - 1881931
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaatta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  1881966 ctttgatgttatatgagcattgtcctgctcaaatta 1881931  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33691551 - 33691502
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttattttta 50  Q
    ||||||||||||||||  || ||||||||||||||||| |||||||||||    
T  33691551 ctttgatgttatatgaaaatggtcctgctcaaattaatatgttattttta 33691502  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 49076458 - 49076388
Alignment:
Q  1 ctttgatgttatatgagcattgtcctgctcaaattaatttgttatttttagccgactctattggtattttgactc 75  Q
    ||||||||||||||||||||||||     ||||||||||| ||||||||||| |||| ||||| |||||||||||    
T  49076458 ctttgatgttatatgagcattgtcg----caaattaatttattatttttagctgactttattgatattttgactc 49076388  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 32057379 - 32057332
Alignment:
Q  5 gatgttatatgagcattgtcctgctcaaattaatttgttatttttagc 52  Q
    ||||||||| ||  |||||||||||||||||||| |||||||||||||    
T  32057379 gatgttatacgactattgtcctgctcaaattaatatgttatttttagc 32057332  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 26798801 - 26798757
Alignment:
Q  7 tgttatatgagcattgtcctgctcaaattaatttgttatttttag 51  Q
    |||||||| ||||||||||| |||| |||| ||||||||||||||    
T  26798801 tgttatataagcattgtcctactcatattagtttgttatttttag 26798757  T

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