View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19093_low_8 (Length: 408)
Name: NF19093_low_8
Description: NF19093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19093_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 3 - 392
Target Start/End: Original strand, 15406483 - 15406877
Alignment:
| Q |
3 |
tgtctcacaacctgaaccttccttttctaccttcactgcttctccctctgtcttcatactctttgcatgcttctttgccttcaataccttcataacctct |
102 |
Q |
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| T |
15406483 |
tgtctcacaacctgaaccttccttttctaccttcactgcttctccctctgtcttcatactctttgcatgcttctttgctttcaataccttcataacctct |
15406582 |
T |
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| Q |
103 |
aaaatcacaaatataacacnnnnnnnnttaacaacatgaagcaacaaaatagccaatgacccttttcaatacacaatttcgatggactagtttgacttct |
202 |
Q |
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| T |
15406583 |
aaaatcacaaatataacacaaaaaaaattaacaacatgaagcaacaaaatagccaatgacccttttcaatacacaatttcgacggactaatttgacttct |
15406682 |
T |
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| Q |
203 |
gnnnnnnnnta---ttcaa--caaagttatttcgattaggattgcagttgcagttacgctgtgaaccttatattaaaaataaaatgtggacaaattataa |
297 |
Q |
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| T |
15406683 |
gaaaagaaaaaaaattcaatacaaagttatttcgattaaaattgcagttgcagttacgctgtgaaccttatattaaaaataaaatgtggacaaattataa |
15406782 |
T |
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| Q |
298 |
agacttctaaaaccgttgaaatttggcctaactcattcttgcaaaaccgaactactgttgcatactacaatttagaactatgcaaaggaagatat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15406783 |
agacttctaaaaccgttgaaatttggcctaactcattcttgcaaaaccgaactactgttgcatactacaatttagaactatgcaaaggaagatat |
15406877 |
T |
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