View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_high_10 (Length: 285)
Name: NF19094_high_10
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_high_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 35425475 - 35425668
Alignment:
| Q |
96 |
aaaggcaaccatatttagtgctagttctcaagattattttgatattacgtgtattgatgctactttatttactgaaatgagctagtttttccttgtgaaa |
195 |
Q |
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| T |
35425475 |
aaaggcaaccatatttagtgctagttctcaagattattttgatattacgtgtattgatgctactttatttactgaaatgagctagtttttccttgtgaaa |
35425574 |
T |
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| Q |
196 |
ataatattgtagta----caagcattgctcttgtttgtgtgtgagagagagagtcaatagtagtataaaactatatcataatattaaaacctaa |
285 |
Q |
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| T |
35425575 |
ataatattgtagtacaagcaagcattgctcttgtttgtgtgtgagagagagaatcaatagtagtataaaactatatcataatattaaaacctaa |
35425668 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 35425329 - 35425417
Alignment:
| Q |
8 |
agattattcttgacatgtcaatgatataatagacgagattattctgagtttgcttttattagtagtaagtttcttaatctagttgtaaaaa |
98 |
Q |
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| T |
35425329 |
agattattcttgacatgtcaatgata--atagacgagattattctgagtttgcttttattagtagtaagtttcttaatctagttgtaaaaa |
35425417 |
T |
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