View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_high_13 (Length: 245)
Name: NF19094_high_13
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_high_13 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 1046518 - 1046307
Alignment:
| Q |
34 |
tatgtaatatgttagttgaattgcataaactcgataacttttaagtcaattttcccatataaatttggcatccaacacagacaatatagtacttgtttct |
133 |
Q |
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| T |
1046518 |
tatgtaatatgttagttgaattgcataaactcgataacttttaagtcaattttcccatataaatttggcatccaacacagacaatatagtacttgtttct |
1046419 |
T |
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| Q |
134 |
ctaacttataaattgttctgtgattaaagtagaaccatcttaaagttatttgaacactgcaaaaaattaataatatataaatatgggtggaccatggtac |
233 |
Q |
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| T |
1046418 |
ctaacttataaattgttctgtgattaaagtagaaccatcttaaagttatttgaacactgcaaaaaattaataatatataaatatgggtggaccatggtac |
1046319 |
T |
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| Q |
234 |
accttatctgtg |
245 |
Q |
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||||||| |||| |
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| T |
1046318 |
accttatatgtg |
1046307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 1010979 - 1011079
Alignment:
| Q |
42 |
atgttagttgaattgcataaactcgataacttttaagtcaattttcccatataaatttggcatccaacacagaca--atatagtacttgtttctctaact |
139 |
Q |
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| T |
1010979 |
atgttaattgaattgcagaaattcaataattttgatgttaaatttcccatataaactagacatccaacacaaacagtatataatacttgtttctctaact |
1011078 |
T |
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| Q |
140 |
t |
140 |
Q |
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| T |
1011079 |
t |
1011079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 986232 - 986381
Alignment:
| Q |
49 |
ttgaattgcataaactcgataacttttaagtcaattttcccatataaatttggcatccaacacaga--caatatagtacttgtttctctaactt-ataaa |
145 |
Q |
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|||||||||||||| || |||| ||| |||| ||||| || ||| ||| || |||| ||||||| | ||||||| ||||||||||| |||||| | ||| |
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| T |
986232 |
ttgaattgcataaattcaataattttgaagtaaatttgcc-atagaaactttgcattcaacacaaatacaatataatacttgtttctttaacttcacaaa |
986330 |
T |
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| Q |
146 |
ttgttctgtgattaaagtagaaccatcttaaagttatttgaacactgcaaa |
196 |
Q |
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||||||||| |||||||||| ||| || | ||||| || |||||||||| |
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| T |
986331 |
ttgttctgtttctaaagtagaaacatattgatgttatctggacactgcaaa |
986381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 1004146 - 1004235
Alignment:
| Q |
49 |
ttgaattgcataaactcgataacttttaagtcaattttcccatataaatttggcatccaacac--agacaatatagtacttgtttctcta |
136 |
Q |
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| T |
1004146 |
ttgaattgcataaatttaataattttgaattcaatttttcgatataaacttggcatccaacacaaatacagtataatacttgtttctcta |
1004235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 1024020 - 1024144
Alignment:
| Q |
42 |
atgttagttgaattgcataaactcgataacttttaagtcaattttcccatataaatttggcatccaacacagaca--atatagtacttgtttctctaact |
139 |
Q |
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|||||| |||||||||| ||| || |||| ||| | | || |||||||| |||| | | ||||||||||| ||| ||||| ||||||||||||||||| |
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| T |
1024020 |
atgttaattgaattgcagaaattcaataattttgatggtaaatttcccatgtaaactagacatccaacacaaacacaatataatacttgtttctctaact |
1024119 |
T |
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| Q |
140 |
tataaattgttctgtgattaaagta |
164 |
Q |
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| T |
1024120 |
ttacaattgttcggcgattaaagta |
1024144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 40641896 - 40641788
Alignment:
| Q |
34 |
tatgtaatatgttagttgaattgcataaactcgataacttttaagtcaattttcccatataaatttggcatccaacacagaca--atatagtacttgttt |
131 |
Q |
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||||| ||| |||| |||||||||| ||| || |||| ||| | || || ||||||||||||| | | ||||||||||| ||| ||||| ||||||||| |
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| T |
40641896 |
tatgttatacgttaattgaattgcagaaattcaataattttgatgttaaatttcccatataaactagacatccaacacaaacacaatataatacttgttt |
40641797 |
T |
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| Q |
132 |
ctctaactt |
140 |
Q |
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||||||||| |
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| T |
40641796 |
ctctaactt |
40641788 |
T |
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