View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_high_14 (Length: 239)
Name: NF19094_high_14
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 24273675 - 24273497
Alignment:
| Q |
15 |
catcctcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataatt |
114 |
Q |
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| T |
24273675 |
catcctcgacaacaacgacattacacggtgccttctcttgttgcatctacctcttcttgggataatcatgcttccaatgccccttctccttacagtaatt |
24273576 |
T |
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| Q |
115 |
gaaaatatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttccctcatttaccatatctctaa |
193 |
Q |
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| T |
24273575 |
gcaaatatcaatcggtttcggatccctactaactggtttcttagaaaatttctttttccatgatttaccatatccctaa |
24273497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Complemental strand, 24273491 - 24273461
Alignment:
| Q |
209 |
gtttactactaacccaatagtctaactatcc |
239 |
Q |
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| T |
24273491 |
gtttactactaacccaatagtctaactatcc |
24273461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 13419218 - 13419394
Alignment:
| Q |
17 |
tcctcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataattga |
116 |
Q |
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| T |
13419218 |
tcctcagcaacaacgacaatacatgataccttctgttgttgcattagcctcttcttgggacaatcattcttctaatgctccttctctttacagtaattgc |
13419317 |
T |
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| Q |
117 |
aaatatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttccctcatttaccatatctctaa |
193 |
Q |
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| T |
13419318 |
aaatattagtcgatttcagacccctactgattggtttcttagtcaacttcttttttcctgatttaccatatccctaa |
13419394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 30047200 - 30047078
Alignment:
| Q |
66 |
tcttcttgggataataatgcttccaatgccccttctccttacaataattgaaaatatcaatcggtttcggatccctgctaactggtttcttagaaaattt |
165 |
Q |
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| T |
30047200 |
tcttcttgggacaatcatacttccaatgtcccttctctttacagtaattgcaaatatcagtcggtttcagacccctactggttggtttcttagataactt |
30047101 |
T |
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| Q |
166 |
ctttttccctcatttaccatatc |
188 |
Q |
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| T |
30047100 |
atttttatctgatttaccatatc |
30047078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 20289198 - 20289334
Alignment:
| Q |
52 |
ttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataattgaaaatatcaatcggtttcggatccctgctaactggt |
151 |
Q |
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| T |
20289198 |
ttgttgcatctgcctcttcttgggacgttcattcttccaatgccccctctccttatagtaattgcaaatatcagtcgaattcagacccctactgactggt |
20289297 |
T |
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| Q |
152 |
ttcttagaaaatttctttttccctcatttaccatatc |
188 |
Q |
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| T |
20289298 |
ttcttagagaacttattttcccctgatttaccatatc |
20289334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 9009439 - 9009598
Alignment:
| Q |
13 |
atcatcctcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataa |
112 |
Q |
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||||||||| |||||| ||||||||| | |||||| ||||||||| | ||||||||||||| ||| || ||||||||| | ||||||||||| ||| |
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| T |
9009439 |
atcatcctcggcaacagagacattacatgatgccttctattgttgcattttcctcttcttgggacaatcattcttccaatggtcattctccttacagtaa |
9009538 |
T |
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| Q |
113 |
ttgaaaatatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttc |
172 |
Q |
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||| |||||||| |||||||| || | || |||| ||| |||||||| || || |||||| |
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| T |
9009539 |
ttgcaaatatcagtcggtttcagacctctactaattggattcttagagaacttttttttc |
9009598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 53471630 - 53471727
Alignment:
| Q |
91 |
atgccccttctccttacaataattgaaaatatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttccctcatttaccatatc |
188 |
Q |
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| T |
53471630 |
atgccctttctccttacagtaattgcaaatatcattcggtgtcagaccccttctgtgcggtttcttagagaacttattttcccctgatttaccatatc |
53471727 |
T |
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