View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_high_3 (Length: 401)
Name: NF19094_high_3
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 37453717 - 37454099
Alignment:
| Q |
10 |
attatacttcaagatatcaacattattcaaacatactaggtatacggtgtaacagtgtctaaccacagtgcagcatctaccaacactaagaaagcccaat |
109 |
Q |
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| T |
37453717 |
attatacttcaagatatcaacattattcaaacatactaggtatacggtataacagtgtctaaccacagtgcagcatctaccaacactaagaaagcccaat |
37453816 |
T |
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| Q |
110 |
tannnnnnnnnnnnnnnnncctaatatcaaactacaaaggcaatatcaaatctaggactgttcaccttgtagacattcgtgatatgcaagcataaccaaa |
209 |
Q |
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| T |
37453817 |
taagagaaagagagagagacctaatatcaaactacaaaggcaatatcaaatctaggactgttcaccttgtagacattcgtgatatgcaagcatgaccaaa |
37453916 |
T |
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| Q |
210 |
tgctttacggtttattcctatattcatattagcaatgggttacctctgtgatatacaatatgtcttaactattgtgagtacatcaacttgacaccaaaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37453917 |
tgctttacggtttattcctatattcatattagcaatgggttacctctgtgatatacaatatgtcttaactattgtgagtacatcaacttgacaccaaaac |
37454016 |
T |
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| Q |
310 |
cctgatacaagttcagttatcagtgcatattaatattgctatgatgttacaattttgacaaaactaaagcactctaagaatat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
37454017 |
cctgatacaagttcagttatcagtgcatattaatattgctatgatgttaaaattttgacaaaactaaagcactcgaagaatat |
37454099 |
T |
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