View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19094_low_10 (Length: 288)

Name: NF19094_low_10
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19094_low_10
NF19094_low_10
[»] scaffold0005 (1 HSPs)
scaffold0005 (15-272)||(30869-31126)
[»] scaffold0002 (1 HSPs)
scaffold0002 (15-272)||(358185-358442)
[»] chr4 (3 HSPs)
chr4 (15-272)||(14808601-14808858)
chr4 (15-268)||(22330164-22330417)
chr4 (171-219)||(17001351-17001399)
[»] chr6 (2 HSPs)
chr6 (15-272)||(14899472-14899729)
chr6 (15-268)||(7406879-7407132)
[»] chr2 (2 HSPs)
chr2 (15-179)||(21602040-21602204)
chr2 (182-272)||(21597187-21597277)
[»] chr7 (3 HSPs)
chr7 (15-268)||(4806047-4806300)
chr7 (15-268)||(12764664-12764917)
chr7 (171-219)||(39290303-39290351)
[»] chr8 (1 HSPs)
chr8 (20-222)||(14322916-14323118)
[»] chr3 (3 HSPs)
chr3 (20-227)||(20149479-20149686)
chr3 (15-268)||(23010852-23011106)
chr3 (171-219)||(15255975-15256023)
[»] chr1 (1 HSPs)
chr1 (20-272)||(23959483-23959735)
[»] scaffold1393 (2 HSPs)
scaffold1393 (73-268)||(583-778)
scaffold1393 (15-90)||(777-852)


Alignment Details
Target: scaffold0005 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 30869 - 31126
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30869 ggggaaaaacttgctccaatttacagagaattataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 30968  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgactt 214  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30969 aatttgactaatttcagtcaacggatttataacatggttaggcaatgaagaaaacacaattggaagtaagcgttccaagaaaacatgatcatcatgactt 31068  T
Q  215 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31069 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 31126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 358185 - 358442
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  358185 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctaaa 358284  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgactt 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  358285 aaattgactaatttcagtcaacggatttataacatgtttaggaaatgaagaaaacacaattggaagtaagcgttccaagaaaacatgatcatcatgactt 358384  T
Q  215 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 272  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  358385 ttcatcccgcgcaatcttccattttcaacgtcggcacaccttgacaagttagaagaat 358442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 14808858 - 14808601
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14808858 ggggaaaaacttgctccaatttacagagaattataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 14808759  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgactt 214  Q
    || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14808758 aatttgactaatttcagtcaacggatttataacatggttaggcaatgaagaaaacacaattggaagtaagcgttccaagaaaacatgatcatcatgactt 14808659  T
Q  215 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14808658 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 14808601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 22330417 - 22330164
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    |||||||||||||||| | |||||| ||| ||||||| ||||| ||||||||||||| |||||||||| ||||||| |||||||| ||||||||| | ||    
T  22330417 ggggaaaaacttgctctagtttacaaagagtgataggcatattttgatccattttaacaagttcatccatcctcaaggttgaagcgcacaagtctttaaa 22330318  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgactt 214  Q
    |||  | |||| ||||||||| || ||||  ||||  || |||||||||  |||| ||||||||||||||||||||  |||||  ||   ||||||||||    
T  22330317 aaaaaggctaacttcagtcaaggggtttaagacattatttggcaatgaactaaacgcaattggaagtaagcgttccaggaaaatgtgggaatcatgactt 22330218  T
Q  215 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaa 268  Q
    ||||| |   ||||||||||    |  |||||||||||||||||||||||||||    
T  22330217 ttcattctatgcaatcttcctgagttgacgtcggcacaccttgacaagttagaa 22330164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 17001399 - 17001351
Alignment:
Q  171 caattggaagtaagcgttcccagaaaacatgatcatcatgacttttcat 219  Q
    ||||||||||||||||||||  ||| ||||||  |||||||||||||||    
T  17001399 caattggaagtaagcgttccatgaacacatgacaatcatgacttttcat 17001351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 14899729 - 14899472
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14899729 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 14899630  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgactt 214  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||    
T  14899629 aaattgactaatttcagtcaacagatttataacatggttaggcaatgaagaaaacgcaattggaagtaagcgttccaagaaaacatgattatcatgactt 14899530  T
Q  215 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14899529 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 14899472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 7406879 - 7407132
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    |||||||||||||||| | |||||| ||| ||||||| ||||| ||||||||||||| |||||||||| ||||||| |||||||| ||||||||| | ||    
T  7406879 ggggaaaaacttgctctagtttacaaagagtgataggcatattttgatccattttaacaagttcatccatcctcaaggttgaagcgcacaagtctttaaa 7406978  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgactt 214  Q
    |||  | |||||||||||||| || ||||  ||||  || ||||||||   |||| |||||||||||||||||||| ||||||| ||   ||||||||||    
T  7406979 aaaaaggctaatttcagtcaaggggtttaagacattgtttggcaatgagctaaacgcaattggaagtaagcgttccaagaaaacgtgggaatcatgactt 7407078  T
Q  215 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaa 268  Q
    ||||| |   ||| ||||||    |  |||||||||||||| ||||||||||||    
T  7407079 ttcattctatgcagtcttcctgagttgacgtcggcacacctcgacaagttagaa 7407132  T

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Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 21602204 - 21602040
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21602204 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 21602105  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaa 179  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||    
T  21602104 aaattgactaatttcaatcaacggatttataacatggttaggcaatgaagaaaacgcaattggaa 21602040  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 21597277 - 21597187
Alignment:
Q  182 aagcgttcccagaaaacatgatcatcatgacttttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 272  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21597277 aagcgctccaagaaaacatgatcatcatgacttttcatcccgcgcaatcttccattttcaacgtcggcacaccttgacaagttagaagaat 21597187  T

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Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 4806047 - 4806300
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    |||||||||||||||| | |||||| ||| ||||||| ||||| ||||||||||||| |||||||||| ||||||| |||||||| ||||||||| | ||    
T  4806047 ggggaaaaacttgctctagtttacaaagagtgataggcatattttgatccattttaacaagttcatccatcctcaaggttgaagcgcacaagtctttaaa 4806146  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgactt 214  Q
    |||  | |||||||||||||| || ||||  ||||  || ||||||||   |||| |||||||||||||||||||| ||||||| ||   ||||||||||    
T  4806147 aaaaaggctaatttcagtcaaggggtttaagacattgtttggcaatgagctaaacgcaattggaagtaagcgttccaagaaaacgtgggaatcatgactt 4806246  T
Q  215 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaa 268  Q
    ||||| |   ||| ||||||    |  |||||||||||||| ||||||||||||    
T  4806247 ttcattctatgcagtcttcctgagttgacgtcggcacacctcgacaagttagaa 4806300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 12764664 - 12764917
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaa 114  Q
    |||||||||||||||| | |||||| ||| ||||||| ||||| ||||||||||||| |||||||||| ||||||| |||||||| ||||||||| | ||    
T  12764664 ggggaaaaacttgctctagtttacaaagagtgataggcatattttgatccattttaacaagttcatccatcctcaaggttgaagcgcacaagtctttaaa 12764763  T
Q  115 aaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgactt 214  Q
    |||  | |||||||||||||| || ||||  ||||  || ||||||||   |||| |||||||||||||||||||| ||||||| ||   ||||||||||    
T  12764764 aaaaaggctaatttcagtcaaggggtttaagacattgtttggcaatgagctaaacgcaattggaagtaagcgttccaagaaaacgtgggaatcatgactt 12764863  T
Q  215 ttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaa 268  Q
    ||||| |   ||| ||||||    |  |||||||||||||| ||||||||||||    
T  12764864 ttcattctatgcagtcttcctgagttgacgtcggcacacctcgacaagttagaa 12764917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 39290351 - 39290303
Alignment:
Q  171 caattggaagtaagcgttcccagaaaacatgatcatcatgacttttcat 219  Q
    ||||||||||||||||||||  ||| ||||||  |||||||||||||||    
T  39290351 caattggaagtaagcgttccatgaacacatgacaatcatgacttttcat 39290303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 14323118 - 14322916
Alignment:
Q  20 aaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaaaaatt 119  Q
    ||||||||||| | |||||||||| |||| || ||||| || |||||||||| |||||||||| | || |  ||||||||||| | |||| | |||||||    
T  14323118 aaaacttgctcaagtttacagagagtgattggcatattctggtccattttaacaagttcatccattcttagagttgaagcacaaaggtctttaaaaaatt 14323019  T
Q  120 gactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgacttttcat 219  Q
    | |||| |||||| || || ||||||||||  || |||||||||  |||  |||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  14323018 ggctaacttcagttaatggttttataacattatttggcaatgaactaaatgcaattggaagtaagcgttgcaagaaaacatgaccatcatgacttttcat 14322919  T
Q  220 ccc 222  Q
    |||    
T  14322918 ccc 14322916  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 20149686 - 20149479
Alignment:
Q  20 aaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaaaaatt 119  Q
    ||||||||||| | |||||||||| |||  || ||||| || |||||||||| |||||||||| | || |  ||||||||||| |  ||| | |||||||    
T  20149686 aaaacttgctcaagtttacagagagtgactggcatattctggtccattttaacaagttcatccgttcttagagttgaagcacaaagatctttaaaaaatt 20149587  T
Q  120 gactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgacttttcat 219  Q
    | |||| ||||||||| || ||||||||||  || |||||||||  ||||||||||||||||||||||  |  |||||||||| ||||||||||||||||    
T  20149586 ggctaacttcagtcaatggttttataacattgtttggcaatgaactaaacacaattggaagtaagcgtagcatgaaaacatgaccatcatgacttttcat 20149487  T
Q  220 cccgcgca 227  Q
    ||| ||||    
T  20149486 cccacgca 20149479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 23011106 - 23010852
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctct-ga 113  Q
    |||||||||||||||| | |||||| ||| ||||||| ||||| ||||||||||||| |||||||||| ||||||| |||||||| ||||||||| |  |    
T  23011106 ggggaaaaacttgctctagtttacaaagagtgataggcatattttgatccattttaacaagttcatccatcctcaaggttgaagcgcacaagtctttaaa 23011007  T
Q  114 aaaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgact 213  Q
    ||||  | |||||||||||||| ||  |||  ||||  || ||||||||   |||| ||||||||||||||||||||  |||||| ||   |||||||||    
T  23011006 aaaaaaggctaatttcagtcaaggggattaagacattgtttggcaatgagcgaaacgcaattggaagtaagcgttccaggaaaacgtgggaatcatgact 23010907  T
Q  214 tttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaa 268  Q
    |||||| |  |||| ||||||    |  |||||||||||||| ||||||||||||    
T  23010906 tttcattctacgcagtcttcctgagttgacgtcggcacacctcgacaagttagaa 23010852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 15255975 - 15256023
Alignment:
Q  171 caattggaagtaagcgttcccagaaaacatgatcatcatgacttttcat 219  Q
    ||||||||||||||||||||  ||| ||||||  |||||||||||||||    
T  15255975 caattggaagtaagcgttccatgaacacatgacaatcatgacttttcat 15256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 23959735 - 23959483
Alignment:
Q  20 aaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaatgttgaagcacacaagtctctgaaaaatt 119  Q
    ||||||||||| | |||||||||| |||  |  ||||| |  |||||||||| |||||||||| | || |  ||||||||||| | |||| | |||||||    
T  23959735 aaaacttgctcaagtttacagagagtgactgacatattctagtccattttaacaagttcatccattcttagagttgaagcacaaaggtctttaaaaaatt 23959636  T
Q  120 gactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacacaattggaagtaagcgttcccagaaaacatgatcatcatgacttttcat 219  Q
    | | || || |||||| || ||||||||||  || |||||||||  |||  |||||||||||||| ||| | ||||||||||| ||||||||||||||||    
T  23959635 ggccaactttagtcaatggttttataacattgtttggcaatgaactaaatgcaattggaagtaagtgttgcaagaaaacatgaccatcatgacttttcat 23959536  T
Q  220 cccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaagaat 272  Q
    ||| ||  |  |||| || |  ||||||||||||||||  || ||||||||||    
T  23959535 cccacgacactttcccttgttgacgtcggcacaccttgctaaattagaagaat 23959483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1393 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold1393
Description:

Target: scaffold1393; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 268
Target Start/End: Complemental strand, 778 - 583
Alignment:
Q  73 aagttcatccttcctcaatgttgaagcacacaagtctctgaaaaattgactaatttcagtcaacggatttataacatgtttaggcaatgaagaaaacaca 172  Q
    |||||||||| ||||||| |||||||| ||||||||| | |||||  | |||||||||||||| || ||||  ||||  || ||||||||   |||| ||    
T  778 aagttcatccatcctcaaggttgaagcgcacaagtctttaaaaaaaaggctaatttcagtcaaggggtttaagacattgtttggcaatgagctaaacgca 679  T
Q  173 attggaagtaagcgttcccagaaaacatgatcatcatgacttttcatcccgcgcaatcttccattttctacgtcggcacaccttgacaagttagaa 268  Q
    |||||||||||| |||||  |||||| ||   ||||||||||||||| |   ||| ||||||    |  |||||||||||||| ||||||||||||    
T  678 attggaagtaagtgttccatgaaaacgtgggaatcatgacttttcattctatgcagtcttcctgagttgacgtcggcacacctcgacaagttagaa 583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1393; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 852 - 777
Alignment:
Q  15 ggggaaaaacttgctccaatttacagagaatgataggaatattatgatccattttaataagttcatccttcctcaa 90  Q
    |||||||||||||||| | |||||| ||| ||||||| ||||| ||||||||||||| |||||||||| |||||||    
T  852 ggggaaaaacttgctctagtttacaaagagtgataggcatattttgatccattttaacaagttcatccatcctcaa 777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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