View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_low_12 (Length: 281)
Name: NF19094_low_12
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 41964842 - 41965096
Alignment:
| Q |
13 |
aatataggccttgacccttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaaca |
112 |
Q |
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| T |
41964842 |
aatataggccttgacccttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaaca |
41964941 |
T |
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| Q |
113 |
cacttgcttagtgtggttagacttaagattgactccatttgaaaaggaaaataagatggattatttgaccttgtatacaattttattggaatgtgacagt |
212 |
Q |
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| T |
41964942 |
cacttgcttagtgtggttagacttaagattgactccatttgaaaaggaaaataagatggattatttgaccttgtatacaattttattagaatgtgacagt |
41965041 |
T |
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| Q |
213 |
cctaaaagtgtttcacgcatgattttattactcttcaaaaccaaaaggaatgtat |
267 |
Q |
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| T |
41965042 |
cctaaaagtgtttcacgcatgattttattactcttcaaaaccaaaaggaatgtat |
41965096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 1226296 - 1226428
Alignment:
| Q |
13 |
aatataggccttgacccttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1226296 |
aatataggccttgacccttttcattaaaaatatttgcaattgggtttttatttttaatttgttgggtctgcaaagaatgtcgtccaaacaatgtgtaaca |
1226395 |
T |
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| Q |
113 |
cacttgcttagtgtggttagacttaagattgac |
145 |
Q |
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| T |
1226396 |
cacttgcttagtgtggttagacttaagattgac |
1226428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 1226424 - 1226514
Alignment:
| Q |
177 |
ttgaccttgtatacaattttattggaatgtgacagtcctaaaagtgtttcacgcatgattttattactcttcaaaaccaaaaggaatgtat |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
1226424 |
ttgaccttgtatacaattttattggaatgtgacagtccgaaaagtgtttcacacatgattttattactcctcaaaaccaaaaggaatgtat |
1226514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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