View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19094_low_13 (Length: 250)
Name: NF19094_low_13
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 24273086 - 24272934
Alignment:
| Q |
89 |
tcttagtatgaacattacgccgatctaataatattgaattcaattgatctagatgttctttccaacaaatacgttccagtgaacttgtcgactttcaaag |
188 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
24273086 |
tcttagtatgaacattacatcgatctaataatattgaattcaattgttctagatgttctttccaggaaataccttccagtgaacttgtcgactttcaaac |
24272987 |
T |
|
| Q |
189 |
aaatccgaaccagctcttgataccagtttgttattacaagatacgagaataat |
241 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24272986 |
aaatccgaacttgctcttgataccagtttgttattacaagatacgagaataat |
24272934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 24273385 - 24273292
Alignment:
| Q |
1 |
tctttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatcttag |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
24273385 |
tctttaccactaatgaaagactccctaaagttctcatatgacaatcgtaatgaaactaacaaaatcaaggcagcttcctcttcatcaatcttag |
24273292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 20289453 - 20289597
Alignment:
| Q |
3 |
tttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatcttagtatgaaca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||| |||||||||||| ||| || | |
|
|
| T |
20289453 |
tttaccactaatgaaagactccctaaagttctcataggacaatggtaaagaaactaacagaatcaaggcaacatcctcatcatcaatcttaatatcaata |
20289552 |
T |
|
| Q |
103 |
ttacgccgatctaataatattgaattcaattgatctagatgttct |
147 |
Q |
| |
|
||| || |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
20289553 |
ttatgcagatcaaataatatcgaattcaattgatctagatgttct |
20289597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 53471851 - 53471990
Alignment:
| Q |
8 |
cactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatcttagtatgaacattacg |
107 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| | | ||||| |||||||||||| ||| || |||||| |
|
|
| T |
53471851 |
cactaatgaaagactccataaatttctcatatgacaatggtaaagaaactaacagaatcaagacaacatcctcatcatcaatcttaatataaatattacg |
53471950 |
T |
|
| Q |
108 |
ccgatctaataatattgaattcaattgatctagatgttct |
147 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
53471951 |
cagatataataatattgaattcaactgatctagatgttct |
53471990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 9009739 - 9009874
Alignment:
| Q |
10 |
ctaatgaaagactccctaaagttctcatatgacaatggt-aatgaaactaacagaatcaaggcggcttcctcttcatcaatcttagtatgaacattacgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || || ||||||||| |||||||| || || |||||||| ||| ||| || ||||||| |
|
|
| T |
9009739 |
ctaatgaaagactccctaaagttctcataagacaatagtaaaaaaaactaacataatcaaggtactatcatcgtcatcaattttaatatcaatattacgc |
9009838 |
T |
|
| Q |
109 |
cgatctaataatattgaattcaattgatctagatgt |
144 |
Q |
| |
|
|||||||| ||| |||| || ||||||| ||||| |
|
|
| T |
9009839 |
agatctaatcatagtgaaatctcttgatctggatgt |
9009874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 30046969 - 30046903
Alignment:
| Q |
3 |
tttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaag |
69 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
30046969 |
tttatcactaatgaaagactccctaaagttctcatatgacaatggtaaagaaactaatagaatcaag |
30046903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13419505 - 13419574
Alignment:
| Q |
1 |
tctttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaagg |
70 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
13419505 |
tctttaccactaatgaaagactccctaaatttctcatatgacaatggtaaagagactaacaaaatcaagg |
13419574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 30046874 - 30046837
Alignment:
| Q |
110 |
gatctaataatattgaattcaattgatctagatgttct |
147 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
30046874 |
gatctaataatattgaattctatttatctagatgttct |
30046837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University