View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19094_low_16 (Length: 239)

Name: NF19094_low_16
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19094_low_16
NF19094_low_16
[»] chr8 (14 HSPs)
chr8 (114-224)||(3642680-3642790)
chr8 (101-224)||(19725037-19725160)
chr8 (114-213)||(16871867-16871966)
chr8 (105-192)||(24247429-24247516)
chr8 (104-192)||(43065250-43065339)
chr8 (114-182)||(36496480-36496548)
chr8 (114-192)||(33628367-33628445)
chr8 (114-182)||(31940236-31940304)
chr8 (1-37)||(38593003-38593039)
chr8 (47-82)||(38592928-38592963)
chr8 (151-224)||(7087669-7087743)
chr8 (135-192)||(45145111-45145166)
chr8 (116-192)||(31158567-31158644)
chr8 (116-192)||(29454534-29454610)
[»] chr1 (16 HSPs)
chr1 (109-224)||(12979582-12979698)
chr1 (114-224)||(45427419-45427530)
chr1 (114-224)||(26921966-26922078)
chr1 (114-224)||(11444561-11444672)
chr1 (101-192)||(22667587-22667678)
chr1 (105-224)||(41085498-41085618)
chr1 (105-224)||(41090266-41090386)
chr1 (114-192)||(28712221-28712299)
chr1 (114-192)||(33196591-33196669)
chr1 (114-215)||(48355013-48355115)
chr1 (101-156)||(31401352-31401407)
chr1 (114-190)||(41903100-41903176)
chr1 (106-209)||(48977184-48977287)
chr1 (100-182)||(8102434-8102515)
chr1 (163-192)||(43025371-43025400)
chr1 (116-192)||(31075935-31076011)
[»] chr4 (20 HSPs)
chr4 (114-224)||(49144236-49144344)
chr4 (114-224)||(22413564-22413675)
chr4 (149-224)||(46564991-46565066)
chr4 (101-182)||(50716222-50716303)
chr4 (122-192)||(23390511-23390581)
chr4 (114-224)||(52760079-52760190)
chr4 (114-192)||(30839568-30839646)
chr4 (114-192)||(40319000-40319078)
chr4 (114-182)||(54851044-54851112)
chr4 (101-182)||(4540893-4540976)
chr4 (114-212)||(25814683-25814781)
chr4 (124-192)||(52104732-52104800)
chr4 (109-166)||(46548374-46548431)
chr4 (124-192)||(4150442-4150510)
chr4 (114-224)||(42881320-42881431)
chr4 (138-192)||(34936874-34936927)
chr4 (114-192)||(48058500-48058577)
chr4 (160-224)||(20927490-20927557)
chr4 (99-192)||(53936837-53936930)
chr4 (116-192)||(56302839-56302915)
[»] chr7 (14 HSPs)
chr7 (114-224)||(30819455-30819565)
chr7 (114-224)||(24202868-24202980)
chr7 (109-224)||(46880158-46880274)
chr7 (114-192)||(27275780-27275858)
chr7 (134-224)||(37118631-37118722)
chr7 (114-192)||(15877078-15877155)
chr7 (114-190)||(428160-428235)
chr7 (114-182)||(39926132-39926200)
chr7 (114-192)||(19503443-19503520)
chr7 (114-192)||(28501664-28501741)
chr7 (116-224)||(1806487-1806596)
chr7 (113-190)||(39226269-39226345)
chr7 (114-156)||(37476807-37476849)
chr7 (122-219)||(8294262-8294359)
[»] chr2 (9 HSPs)
chr2 (114-224)||(5155976-5156087)
chr2 (122-213)||(2639927-2640018)
chr2 (121-182)||(29943567-29943628)
chr2 (109-224)||(13507543-13507658)
chr2 (123-192)||(22594751-22594819)
chr2 (116-192)||(35896737-35896813)
chr2 (116-192)||(1580566-1580642)
chr2 (122-158)||(6279881-6279917)
chr2 (163-224)||(37425505-37425568)
[»] chr3 (17 HSPs)
chr3 (114-224)||(46948916-46949028)
chr3 (115-224)||(41575027-41575137)
chr3 (114-224)||(40283920-40284030)
chr3 (114-192)||(54830825-54830903)
chr3 (109-182)||(52458274-52458347)
chr3 (114-192)||(52179284-52179361)
chr3 (114-192)||(542366-542446)
chr3 (104-192)||(41901943-41902030)
chr3 (114-192)||(19608298-19608375)
chr3 (116-224)||(1129421-1129529)
chr3 (119-224)||(9251867-9251973)
chr3 (114-192)||(43388467-43388544)
chr3 (116-193)||(29491669-29491746)
chr3 (116-224)||(40477763-40477872)
chr3 (163-203)||(39987655-39987695)
chr3 (136-192)||(47243708-47243764)
chr3 (148-192)||(47600272-47600316)
[»] chr6 (7 HSPs)
chr6 (114-224)||(33610992-33611103)
chr6 (114-192)||(22734709-22734787)
chr6 (114-182)||(32715608-32715676)
chr6 (114-189)||(31394193-31394268)
chr6 (138-192)||(5078175-5078229)
chr6 (116-192)||(13719117-13719193)
chr6 (114-215)||(2197787-2197889)
[»] chr5 (8 HSPs)
chr5 (109-224)||(231498-231614)
chr5 (109-192)||(15264042-15264124)
chr5 (124-192)||(11489912-11489980)
chr5 (114-192)||(14054415-14054493)
chr5 (138-188)||(36183751-36183801)
chr5 (116-224)||(10568761-10568871)
chr5 (101-190)||(41609077-41609167)
chr5 (136-192)||(32092107-32092163)
[»] scaffold0014 (1 HSPs)
scaffold0014 (107-193)||(90049-90133)
[»] scaffold0432 (1 HSPs)
scaffold0432 (116-224)||(3321-3430)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 3642680 - 3642790
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctat 213  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  3642680 atttctacggtacactcaacaaaattgagtgcatcggtacacctacatattaaattaatagtttaatgagttactttttaaaaaaaaatatattttctat 3642779  T
Q  214 cagttataatt 224  Q
    |||||||||||    
T  3642780 cagttataatt 3642790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 19725037 - 19725160
Alignment:
Q  101 tatatatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataa 200  Q
    |||||||||||  ||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  19725037 tatatatatggtgatttctacaatacactcaacaaaattgagtgtaccggtacacctatatattaaattaatagtttaatgagttattttttaaaaaaat 19725136  T
Q  201 ataaattttctatcagttataatt 224  Q
    ||| |   ||||||||||||||||    
T  19725137 atataccctctatcagttataatt 19725160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 16871966 - 16871867
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctat 213  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||| | || |||||| ||||||||||||||||||||||| | || ||||| |||||||||    
T  16871966 atttctatggtacactcaataaaattgagtgtaccggtacacccatatgttaaatgaatagtttaatgagttatttttttagaaaaaatatattttctat 16871867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 24247429 - 24247516
Alignment:
Q  105 tatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||||||| ||||||| ||||||||||| ||||||||||| ||||||||||| | || |||||| |||||||||||||||||||||||    
T  24247429 tatatggcaatttctatggtacactcaataaaattgagtgtaccggtacacccatatgttaaatgaatagtttaatgagttatttttt 24247516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 43065339 - 43065250
Alignment:
Q  104 atatatggctatttctacggtacactcaacaaaa-ttgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||| |||| ||||||||||||||||||| |||| ||||||| ||||||||||| | || |||||| |||||||||||||||||||||||    
T  43065339 atatttggcaatttctacggtacactcaataaaaattgagtgtaccggtacacccatatgttaaatgaatagtttaatgagttatttttt 43065250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 36496548 - 36496480
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    ||||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |||||||||||||    
T  36496548 atttctacggtacactcaaaaaaattgaatgtaccggtacacctatatattaaatgaatagtttaatga 36496480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 33628367 - 33628445
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| |||||| |||| ||||||||||| | ||||||||| | || |||||| |||||||||||||||||||||||    
T  33628367 atttctatggtacattcaataaaattgagtgtatcggtacacccatatgttaaatgaatagtttaatgagttatttttt 33628445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 31940236 - 31940304
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    |||| |||||||||||||| ||| || |||| ||||||||||||| ||||||||| |||||||||||||    
T  31940236 atttttacggtacactcaaaaaatttaagtgtaccggtacacctatatattaaatgaatagtttaatga 31940304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38593039 - 38593003
Alignment:
Q  1 tttggtatctttatagtataagatgtcaaggctttat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  38593039 tttggtatctttatagtataagatgtcaaggctttat 38593003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 38592963 - 38592928
Alignment:
Q  47 tataagatgttaaggttatgtatatttagcatcttt 82  Q
    ||||||||||||||||||||||||||||||||||||    
T  38592963 tataagatgttaaggttatgtatatttagcatcttt 38592928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 7087669 - 7087743
Alignment:
Q  151 tacacctacatattaaattaatagtttaatgagtta-ttttttaaaaataaataaattttctatcagttataatt 224  Q
    |||||||| || |||||| ||||||||||||||||| |||||| | || ||||| ||||||||| ||||| ||||    
T  7087669 tacacctatatgttaaatgaatagtttaatgagttattttttttagaaaaaatatattttctattagttacaatt 7087743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 45145166 - 45145111
Alignment:
Q  135 aaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||||||||| |||||||||  | |||||||||| ||||||||||| |||||||||||    
T  45145166 aaattgagtgtaccggtaca--ttcatattaaatgaatagtttaataagttatttttt 45145111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 31158567 - 31158644
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagttt-aatgagttatttttt 192  Q
    ||||||||||||| ||||| | ||||||||||||||||||| |    ||||||| ||||||| |||||||| ||||||    
T  31158567 ttctacggtacacccaacatatttgagtgcaccggtacaccaaacctttaaatttatagtttaaatgagttgtttttt 31158644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 29454610 - 29454534
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||| ||||||| ||| | | ||||||| ||||||||||| ||   |||||||||||||| ||| |||||||||||    
T  29454610 ttctatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagttatttttt 29454534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 12979582 - 12979698
Alignment:
Q  109 tggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta-aaaataaataaatt 207  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||    
T  12979582 tggcaatttctacggtacactcaacaaaattaagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttagaaaaaaaatatatt 12979681  T
Q  208 ttctatcagttataatt 224  Q
    |||||||||||||||||    
T  12979682 ttctatcagttataatt 12979698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 45427530 - 45427419
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta-aaaataaataaattttcta 212  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||||    
T  45427530 atttctacggtacactcaacaaaattgagtgcaccgatacacctacatattaaattaatagtttaatgaattattttttagaaaaaaaatatattttcta 45427431  T
Q  213 tcagttataatt 224  Q
    ||||||||||||    
T  45427430 tcagttataatt 45427419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 26922078 - 26921966
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatt--ttttaaaaataaataaattttct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||| | ||| |||||||    
T  26922078 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaataagttattttttttaaaaaaatatatattttct 26921979  T
Q  212 atcagttataatt 224  Q
    |||||||||||||    
T  26921978 atcagttataatt 26921966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 11444672 - 11444561
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta-aaaataaataaattttcta 212  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  11444672 atttctaccgtacactcaacaaaattgaatgcatcggtacacctacatattaaattaatagtttaatgagttattttttagaaaaaaaatatattttcta 11444573  T
Q  213 tcagttataatt 224  Q
    ||||||||||||    
T  11444572 tcagttataatt 11444561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 22667678 - 22667587
Alignment:
Q  101 tatatatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||||||||||  ||||||| ||||||||||| ||||||||||| ||| ||||||| | || |||| | |||||||||||||||||||||||    
T  22667678 tatatatatggtaatttctatggtacactcaataaaattgagtgtaccagtacacccatatgttaattgaatagtttaatgagttatttttt 22667587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 41085498 - 41085618
Alignment:
Q  105 tatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagtta-ttttttaaaaataaata 203  Q
    |||| ||| ||||||| ||||||||||| ||||||||||| ||||||||| | | || |||||| ||||||||||||| ||| |||||| | || |||||    
T  41085498 tataaggcaatttctatggtacactcaataaaattgagtgtaccggtacatccatatgttaaatgaatagtttaatgaattattttttttagaaaaaata 41085597  T
Q  204 aattttctatcagttataatt 224  Q
     |||||||||  |||||||||    
T  41085598 tattttctattggttataatt 41085618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 41090266 - 41090386
Alignment:
Q  105 tatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagtta-ttttttaaaaataaata 203  Q
    |||| ||| ||||||| ||||||||||| ||||||||||| ||||||||| | | || |||||| ||||||||||||| ||| |||||| | || |||||    
T  41090266 tataaggcaatttctatggtacactcaataaaattgagtgtaccggtacatccatatgttaaatgaatagtttaatgaattattttttttagaaaaaata 41090365  T
Q  204 aattttctatcagttataatt 224  Q
     |||||||||  |||||||||    
T  41090366 tattttctattggttataatt 41090386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 28712299 - 28712221
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||||| ||||||||||  ||||||||||  | || |||||| ||||||||||||||||| |||||    
T  28712299 atttctatggtacactcaataaaattgagtataccggtacactcatatgttaaatgaatagtttaatgagttacttttt 28712221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 33196669 - 33196591
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||| ||||| ||||||||||| ||||||||| | | || |||||| ||||||||||||| |||||||||    
T  33196669 atttctatggtacgctcaataaaattgagtgtaccggtacatccatatgttaaataaatagtttaatgaattatttttt 33196591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 48355115 - 48355013
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacaccta-catattaaattaatagtttaatgagttattttttaaaaataaataaattttcta 212  Q
    |||||||||||| |||||| ||| ||||||| || ||||||||||  ||||||||| ||||||||||||| ||||||   ||||| | ||| ||||||||    
T  48355115 atttctacggtatactcaaaaaagttgagtgtactggtacacctataatattaaatgaatagtttaatgaattatttaaaaaaaaaacatatattttcta 48355016  T
Q  213 tca 215  Q
    |||    
T  48355015 tca 48355013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 31401352 - 31401407
Alignment:
Q  101 tatatatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacc 156  Q
    |||||||||||| | ||||||||||||| ||||| | |||||||||||||||||||    
T  31401352 tatatatatggcaaattctacggtacacccaacatatttgagtgcaccggtacacc 31401407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 41903100 - 41903176
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttt 190  Q
    ||||||| ||||||||||| |||||||| || | |||||||   | || |||||| |||||||||||||||||||||    
T  41903100 atttctatggtacactcaataaaattgaatgtatcggtacattcatatgttaaatgaatagtttaatgagttatttt 41903176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 48977287 - 48977184
Alignment:
Q  106 atatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaa 205  Q
    ||||||| | ||||| ||||||||||| | | ||||||| ||||||||||| ||   |||||||||||||| ||| |||| |||||| || | ||||| |    
T  48977287 atatggcaaattctatggtacactcaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagttgttttttgaagaaaaatata 48977188  T
Q  206 tttt 209  Q
    ||||    
T  48977187 tttt 48977184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 8102434 - 8102515
Alignment:
Q  100 ttatatatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    ||||||||| ||| |||| ||||||| |||||| ||||||||||| ||||||| ||  | ||||||| | |||||||||||||    
T  8102434 ttatatata-ggcaatttttacggtagactcaaaaaaattgagtgtaccggtatactcatatattaactgaatagtttaatga 8102515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 43025400 - 43025371
Alignment:
Q  163 ttaaattaatagtttaatgagttatttttt 192  Q
    ||||||||||||||||||||||||||||||    
T  43025400 ttaaattaatagtttaatgagttatttttt 43025371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 31076011 - 31075935
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||| ||||||| ||| | | ||||||| ||||||||||| |   |||||||||||| || |||||||||||||||    
T  31076011 ttctatggtacacccaatatatttgagtgtaccggtacacccattcattaaattaataattaaatgagttatttttt 31075935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 49144344 - 49144236
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  |||||||||    
T  49144344 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttaaaaaaaaaat--attttctat 49144247  T
Q  214 cagttataatt 224  Q
    |||||||||||    
T  49144246 cagttataatt 49144236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 22413564 - 22413675
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta-aaaataaataaattttcta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| | ||| ||||||||    
T  22413564 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgaattatttattagaaaaaatatatattttcta 22413663  T
Q  213 tcagttataatt 224  Q
    ||| ||||||||    
T  22413664 tcaattataatt 22413675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 46565066 - 46564991
Alignment:
Q  149 ggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctatcagttataatt 224  Q
    ||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||    
T  46565066 ggtacacctacgtattaaattaatagtttaataagttattttttagaaaaaaatatattttctatcagttataatt 46564991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 50716222 - 50716303
Alignment:
Q  101 tatatatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    |||||||||||| |||||||||||||||| || ||||||||||| ||||||||||| | ||||||||| |||||||||||||    
T  50716222 tatatatatggcaatttctacggtacacttaaaaaaattgagtgtaccggtacacccatatattaaatgaatagtttaatga 50716303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 23390511 - 23390581
Alignment:
Q  122 ggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||||||| ||||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  23390511 ggtacactcaataaaattgagtgtaccggtacacccatatattaaatgaatagtttaatgagttatttttt 23390581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 52760190 - 52760079
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatt-ttttaaaaataaataaattttcta 212  Q
    ||||||| ||||||||||| ||||||||||| ||  ||||||  | ||||||||| ||||||||||||||||||| |||| | || ||||| ||||||||    
T  52760190 atttctatggtacactcaataaaattgagtgtactagtacacgcatatattaaatgaatagtttaatgagttattttttttagaaaaaatatattttcta 52760091  T
Q  213 tcagttataatt 224  Q
    | ||||||||||    
T  52760090 ttagttataatt 52760079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 30839646 - 30839568
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||||| ||| ||||||| ||||||||||| | || |||||| |||||||||||||||||||||||    
T  30839646 atttctatggtacactcaataaatttgagtgtaccggtacacccatatgttaaatgaatagtttaatgagttatttttt 30839568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 40319000 - 40319078
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| |||||| |||| ||||||||||| || |||||||| | ||||||||| |||||||||||||||||||||||    
T  40319000 atttctatggtacattcaataaaattgagtgtactggtacacccatatattaaatgaatagtttaatgagttatttttt 40319078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 54851044 - 54851112
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||| | ||||||||| |||||||||||||    
T  54851044 atttctacggtacactcaaaaaaattgagtgtaccagtacacccatatattaaatgaatagtttaatga 54851112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 4540976 - 4540893
Alignment:
Q  101 tatatatat-ggctatttctacggtacactcaacaaaa-ttgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||||| ||||||||||| | ||||||||| |||||||||||||    
T  4540976 tatatatataggcaatttctacggtacactcaaaaaaaattgagtgtaccggtacacccatatattaaatgaatagtttaatga 4540893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 25814781 - 25814683
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttcta 212  Q
    ||||||| |||||| || | ||||||||||| ||||||||||| | || |||||| ||||||||||| ||||||||||| | || ||||| ||||||||    
T  25814781 atttctatggtacattcgataaaattgagtgtaccggtacacccatatgttaaatgaatagtttaataagttatttttttagaaaaaatatattttcta 25814683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 52104800 - 52104732
Alignment:
Q  124 tacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||| |||| ||||||||||| ||||||||| ||| || |||||| |||||||||||||||||||||||    
T  52104800 tacattcaataaaattgagtgtaccggtacatctatatgttaaatgaatagtttaatgagttatttttt 52104732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 46548374 - 46548431
Alignment:
Q  109 tggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaa 166  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||| | |||||||    
T  46548374 tggcaatttctacggtacactcaaaaaaattgagtgtaccggtacacccatatattaa 46548431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 4150510 - 4150442
Alignment:
Q  124 tacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||||| ||||||||||| ||||||||||| | || |||||  |||||||||||||||| ||||||    
T  4150510 tacactcaataaaattgagtgtaccggtacacccatatgttaaacgaatagtttaatgagttttttttt 4150442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 42881431 - 42881320
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaata-aattttcta 212  Q
    |||||||| |||||| ||||| | ||||||| ||||||||||| |  | | ||||| |||||| ||||||||||||||| || | |||||  ||||| ||    
T  42881431 atttctaccgtacacccaacatatttgagtgtaccggtacaccaaagtctaaaatttatagttaaatgagttattttttgaagaaaaatattatttttta 42881332  T
Q  213 tcagttataatt 224  Q
    ||| ||||||||    
T  42881331 tcatttataatt 42881320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 34936927 - 34936874
Alignment:
Q  138 ttgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||| ||||||||| || ||||||||||||||||||||||||| ||||    
T  34936927 ttgagtgtacctgtacacctatat-ttaaattaatagtttaatgagttatatttt 34936874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 48058500 - 48058577
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||| | ||| ||||||| || | |||||||| || |||| |||||||||||||||||||| ||||    
T  48058500 atttctatggtacactcgaaaaacttgagtgtactgctacacctatat-ttaatttaatagtttaatgagttatatttt 48058577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 20927490 - 20927557
Alignment:
Q  160 atattaaattaatagtttaatgagtta---ttttttaaaaataaataaattttctatcagttataatt 224  Q
    ||||||||| |||||||||||||||||   ||||||| ||| ||||| |||||||||  |||||||||    
T  20927490 atattaaatgaatagtttaatgagttatttttttttagaaaaaaatatattttctattggttataatt 20927557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 53936930 - 53936837
Alignment:
Q  99 gttatatatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||||| ||||||| | ||||| ||||||| ||| | | ||||||| ||||||||||| |    |||||||||||||| |||||||| ||||||    
T  53936930 gttatacatatggcaaattctatggtacacccaatatatttgagtgtaccggtacacccattctttaaattaatagttaaatgagttgtttttt 53936837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 56302839 - 56302915
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||| ||||||| ||| | | |||| |||||||||||||| ||   |||||||||||||| ||| |||||||||||    
T  56302839 ttctatggtacacccaatatatttgaatgcaccggtacacccaccatttaaattaatagttaaataagttatttttt 56302915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 30819455 - 30819565
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | |||||||||    
T  30819455 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttttgaaaaaaacatattttctat 30819554  T
Q  214 cagttataatt 224  Q
    |||||||||||    
T  30819555 cagttataatt 30819565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 24202868 - 24202980
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt--aaaaataaataaattttct 211  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  ||||| | ||| |||||||    
T  24202868 atttctacggtacactcaacaaaattgagtgcagtggtacacctacatattaaattaatagtttaatgagttattttttagaaaaaaatatatattttct 24202967  T
Q  212 atcagttataatt 224  Q
    |||||||||||||    
T  24202968 atcagttataatt 24202980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 46880274 - 46880158
Alignment:
Q  109 tggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatt-ttttaaaaataaataaatt 207  Q
    |||| ||||| || ||||||||||  |||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |||| | || ||||| |||    
T  46880274 tggcaatttccacagtacactcaaacaaattgagtgcaccggtacacccatatattaaataaatagtttaatgagttattttttttagaaaaaatatatt 46880175  T
Q  208 ttctatcagttataatt 224  Q
    |||||||||||||||||    
T  46880174 ttctatcagttataatt 46880158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 27275780 - 27275858
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||||| ||||||||||| ||| | ||||| | || |||||| |||||||||||||||||||||||    
T  27275780 atttctatggtacactcaataaaattgagtgtaccagcacacccatatgttaaatgaatagtttaatgagttatttttt 27275858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 37118722 - 37118631
Alignment:
Q  134 aaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatt-ttttaaaaataaataaattttctatcagttataatt 224  Q
    ||||||||||| ||||||||||  | ||||||||| ||||||||||||||||||| |||| | || ||||| ||||||||||| ||| ||||    
T  37118722 aaaattgagtgtaccggtacactcatatattaaatgaatagtttaatgagttattttttttagaaaaaatatattttctatcatttacaatt 37118631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 15877078 - 15877155
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| |||||| || | ||| ||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||    
T  15877078 atttctatggtacattcgaaaaatttgagtgtaccggtacacctatat-ttaaattaatagtttaatgagttatatttt 15877155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 428235 - 428160
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttt 190  Q
    ||||||| ||||||||| | ||| ||||||| || |||||||| | || ||||||||||||||||||||||||||||    
T  428235 atttctatggtacactcgaaaaatttgagtgtactggtacacccatat-ttaaattaatagtttaatgagttatttt 428160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 39926200 - 39926132
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    |||||||| ||||| |||| ||||||||||  ||||||||||| | ||||||||| |||||||||||||    
T  39926200 atttctactgtacattcaaaaaaattgagtataccggtacacccatatattaaataaatagtttaatga 39926132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 19503520 - 19503443
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||| | ||  ||||||| | ||||||||||| || ||||||||||||||||||||||||| ||||    
T  19503520 atttctatggtacactcgaaaagtttgagtgtatcggtacacctatat-ttaaattaatagtttaatgagttatatttt 19503443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 28501741 - 28501664
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||| | ||| ||||||| |||| |||||||| || |||| |||||||||||||||||||| ||||    
T  28501741 atttctatggtacactcgaaaaatttgagtgtaccgctacacctatat-ttaatttaatagtttaatgagttatatttt 28501664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 1806487 - 1806596
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaata-aattttctatc 214  Q
    ||||| ||||||||||| | | ||||||| ||||||||||||||   |||||||||||||| ||| |||| |||||| || | |||||  ||||| ||||    
T  1806487 ttctatggtacactcaatatatttgagtgtaccggtacacctactctttaaattaatagttaaataagttgttttttgaagaaaaatattattttttatc 1806586  T
Q  215 agttataatt 224  Q
    | ||||||||    
T  1806587 atttataatt 1806596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 39226269 - 39226345
Alignment:
Q  113 tatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttt 190  Q
    |||||||| |||||| || | ||| ||||||| | |||||||| || || ||||||||||||||||||||||||||||    
T  39226269 tatttctaaggtacattcgaaaaatttgagtgtatcggtacacatatat-ttaaattaatagtttaatgagttatttt 39226345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 37476807 - 37476849
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacc 156  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||    
T  37476807 atttctatggtacactcaataaaattgagtgtaccggtacacc 37476849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 8294262 - 8294359
Alignment:
Q  122 ggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctatcagtta 219  Q
    ||||||||| | |||||| |||| |||  |||||| | ||||||||| ||||||||||||||||  ||||| |  | ||||| |||||||||| ||||    
T  8294262 ggtacactctaaaaaatttagtgtaccaatacacccaaatattaaatgaatagtttaatgagtttcttttttagtaaaaatacattttctatctgtta 8294359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 5156087 - 5155976
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta-aaaataaataaattttcta 212  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  5156087 atttctacgatacactcaacaaaattgagtgcaccggtacatctacatattaaattaatagtttaatgagttattttttagaaaaaaaatatattttcta 5155988  T
Q  213 tcagttataatt 224  Q
    ||||||||||||    
T  5155987 tcagttataatt 5155976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 2639927 - 2640018
Alignment:
Q  122 ggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctat 213  Q
    ||||||||||| ||||||||||| |  |||||||| | || |||||| ||||||||||||||||||||||| | || ||||| |||||||||    
T  2639927 ggtacactcaataaaattgagtgtataggtacacccatatgttaaatgaatagtttaatgagttatttttttagaaaaaatatattttctat 2640018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 29943567 - 29943628
Alignment:
Q  121 cggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    |||||||||||| ||||||||||| ||||||||||| | ||||||||| |||||||||||||    
T  29943567 cggtacactcaaaaaaattgagtgtaccggtacacccatatattaaatgaatagtttaatga 29943628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 13507658 - 13507543
Alignment:
Q  109 tggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta-aaaataaataaatt 207  Q
    |||| |||||||||  |||||||| ||| ||||||| ||||||| ||||| || |||||| |||||||||||||| ||||||||| |||| ||| | |||    
T  13507658 tggcaatttctacgacacactcaaaaaatttgagtgtaccggtatacctatat-ttaaatgaatagtttaatgagatattttttataaaaaaaaaatatt 13507560  T
Q  208 ttctatcagttataatt 224  Q
    |||||||| ||| ||||    
T  13507559 ttctatcaattacaatt 13507543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 22594751 - 22594819
Alignment:
Q  123 gtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||||||| | ||| ||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||    
T  22594751 gtacactcgaaaaatttgagtgtaccggtacacctatat-ttaaattaatagtttaatgagttatatttt 22594819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 35896813 - 35896737
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||| ||||||||||| | | ||||||| ||||||||||| |||  |||||||||||||| ||| |||| ||||||    
T  35896813 ttctatggtacactcaatatatttgagtgtaccggtacacccacactttaaattaatagttaaataagttgtttttt 35896737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 1580642 - 1580566
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||| ||||||| ||| | | ||||||| |||||||||| |||   ||||||||| |||| |||||||||||||||    
T  1580642 ttctatggtacacccaatatatttgagtgtaccggtacacttactctttaaattaacagttaaatgagttatttttt 1580566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 6279917 - 6279881
Alignment:
Q  122 ggtacactcaacaaaattgagtgcaccggtacaccta 158  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  6279917 ggtacactcaataaaattgagtgtaccggtacaccta 6279881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 37425568 - 37425505
Alignment:
Q  163 ttaaattaatagtttaatgagttattttttaaaaataaataa--attttctatcagttataatt 224  Q
    |||||||||||||| ||||||||||||||| || | ||||||  ||||||||||| ||| ||||    
T  37425568 ttaaattaatagttaaatgagttattttttgaagaaaaataattattttctatcatttacaatt 37425505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 46949028 - 46948916
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt--aaaaataaataaattttct 211  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| | ||| |||||||    
T  46949028 atttttacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgaattattttttagaaaaaaatatatattttct 46948929  T
Q  212 atcagttataatt 224  Q
    |||||||||||||    
T  46948928 atcagttataatt 46948916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 41575137 - 41575027
Alignment:
Q  115 tttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaa-ataaataaattttctat 213  Q
    ||||||||||| | |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||  |||| ||| ||| |||||||||    
T  41575137 tttctacggtatattcaacaaaattgagtgtaccgatacacctatatattaaattaatagtttaatgagttattttaaaaaatatatatatattttctat 41575038  T
Q  214 cagttataatt 224  Q
    |||||||||||    
T  41575037 cagttataatt 41575027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 40283920 - 40284030
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctat 213  Q
    |||| ||||||||| |||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| | || ||||| |||||||||    
T  40283920 atttatacggtacattcaaaaaaattgagtgcaccggtacacccatatattaaataaatagtttaatgagttatttttttagaaaaaatatattttctat 40284019  T
Q  214 cagttataatt 224  Q
    |  ||||||||    
T  40284020 cgattataatt 40284030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 54830825 - 54830903
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||||| ||||||||||  ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  54830825 atttctatggtacactcaataaaattgagtataccggtacacccatatattaaatgaatagtttaatgagttatttttt 54830903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 52458347 - 52458274
Alignment:
Q  109 tggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    |||| ||||||||||||||||||| ||||||||||| |||| |||||| | ||||||||| |||||||||||||    
T  52458347 tggcaatttctacggtacactcaaaaaaattgagtgtaccgctacacccatatattaaataaatagtttaatga 52458274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 52179361 - 52179284
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||| | ||| ||||||| || |||||||||| || ||||||||||||||||||||||| ||||||    
T  52179361 atttctatggtacactcgaaaaatttgagtgtactggtacacctatat-ttaaattaatagtttaatgagttttttttt 52179284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 542366 - 542446
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacc--tacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||  || || |||||| ||||||||||| ||| |||||||    
T  542366 atttctatggtacactcaataaaattgagtgtaccggtacacccatatatgttaaatgaatagtttaataagtcatttttt 542446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 41901943 - 41902030
Alignment:
Q  104 atatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||| |||| ||||||| ||||||||| | ||| ||||||| |||| |||||||| || |||| |||||||||||||||||||| ||||    
T  41901943 atatttggcaatttctatggtacactcgaaaaatttgagtgtaccgctacacctatat-ttaatttaatagtttaatgagttatatttt 41902030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 19608298 - 19608375
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||| | ||| |||| || ||||||||||||| || |||||||||||||||||||| |||| ||||    
T  19608298 atttctatggtacactcgaaaaatttgaatgtaccggtacacctatat-ttaaattaatagtttaatgaattatatttt 19608375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 1129529 - 1129421
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaataaattttctatca 215  Q
    ||||| ||||||||||| | | ||||||| ||||||||||| ||   |||||||||||||| ||| |||| |||||| || | |||||  |||| |||||    
T  1129529 ttctatggtacactcaatacatttgagtgtaccggtacacccactctttaaattaatagttaaataagttgttttttgaagaaaaatattttttttatca 1129430  T
Q  216 gttataatt 224  Q
     ||||||||    
T  1129429 tttataatt 1129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 9251867 - 9251973
Alignment:
Q  119 tacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaata-aattttctatcagt 217  Q
    |||||||||||||||| | ||||||| ||||||||||| || | |||| || |||  | |||||||| |||||| |||| |||||  ||||| ||||| |    
T  9251867 tacggtacactcaacatatttgagtgtaccggtacaccaaccttttaattttataagtaaatgagttgttttttgaaaaaaaatattattttttatcatt 9251966  T
Q  218 tataatt 224  Q
    |||||||    
T  9251967 tataatt 9251973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 43388544 - 43388467
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| || |||||| | ||| |||||||  |||||||| ||| || |||||||||||||||||||| |||||||||    
T  43388544 atttctatggcacactcgaaaaatttgagtgtgccggtacaactatat-ttaaattaatagtttaatgaattatttttt 43388467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 29491669 - 29491746
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta 193  Q
    ||||| ||||||| ||| | | ||||||| ||||||||||| ||   |||||||||||||| ||| ||||||||||||    
T  29491669 ttctatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagttatttttta 29491746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 40477763 - 40477872
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaata-aattttctatc 214  Q
    ||||| ||||||| ||| | | ||||||| ||||||||||| ||   |||||||||||||| ||| ||||||||||| || | |||||  ||||| ||||    
T  40477763 ttctatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagttattttttgaagaaaaatattattttttatc 40477862  T
Q  215 agttataatt 224  Q
    | ||||||||    
T  40477863 atttataatt 40477872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 39987695 - 39987655
Alignment:
Q  163 ttaaattaatagtttaatgagttattttttaaaaataaata 203  Q
    ||||||| |||||| |||||||||||||||||||| |||||    
T  39987695 ttaaattcatagttaaatgagttattttttaaaaaaaaata 39987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 47243708 - 47243764
Alignment:
Q  136 aattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||||| ||||||||||| | || |||||| ||||||||||||| || ||||||    
T  47243708 aattgagtgtaccggtacacccatatgttaaatcaatagtttaatgaattttttttt 47243764  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 47600316 - 47600272
Alignment:
Q  148 cggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||||| | || |||||| |||||||||||||||||||||||    
T  47600316 cggtacacccatatgttaaatgaatagtttaatgagttatttttt 47600272  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 33611103 - 33610992
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta-aaaataaataaattttcta 212  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||||    
T  33611103 atttctacggtacactcaacaaaattgaatgcaccgatacacctacatattaaattaatagtttaatgaattattttttagaaaaaaaatatattttcta 33611004  T
Q  213 tcagttataatt 224  Q
    | | ||||||||    
T  33611003 ttaattataatt 33610992  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 22734709 - 22734787
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||||||||||||||| ||||||||||| |  |||||||| | || |||||| |||||||||||||||||||||||    
T  22734709 atttctacggtacactcaataaaattgagtgtataggtacacccatatgttaaatgaatagtttaatgagttatttttt 22734787  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 32715608 - 32715676
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatga 182  Q
    ||||||| |||||| |||| ||||||||||| ||||||||| | | ||||||||| |||||||||||||    
T  32715608 atttctatggtacattcaaaaaaattgagtgtaccggtacatccatatattaaatgaatagtttaatga 32715676  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 31394193 - 31394268
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattt 189  Q
    ||||||| |||||| | || ||||||||||| | ||||||| | | || |||||| ||||||||||||||||||||    
T  31394193 atttctatggtacatttaataaaattgagtgtatcggtacatccatatgttaaataaatagtttaatgagttattt 31394268  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 5078175 - 5078229
Alignment:
Q  138 ttgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| |||| ||||| || || |||||| |||||||||||||||||||||||    
T  5078175 ttgagtgtaccgatacacttatatgttaaatgaatagtttaatgagttatttttt 5078229  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 13719117 - 13719193
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacata-ttaaattaatagtttaatgagttatttttt 192  Q
    ||||||||||||| ||||| | ||||||| |||||||||| || ||  ||||||| |||||| |||||||||||||||    
T  13719117 ttctacggtacacccaacatatttgagtgtaccggtacac-tagatccttaaatttatagttaaatgagttatttttt 13719193  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 2197787 - 2197889
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagtta--ttttttaaaaataaataaattttct 211  Q
    |||||||  |||||||| | ||| ||||||| |||  |||||| | || ||||||||||||||||||||||||  ||||||| ||| ||| | |||||||    
T  2197787 atttctattgtacactcgaaaaatttgagtgtaccaatacacccatat-ttaaattaatagtttaatgagttactttttttagaaaaaaaaatattttct 2197885  T
Q  212 atca 215  Q
    ||||    
T  2197886 atca 2197889  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 231498 - 231614
Alignment:
Q  109 tggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagtta-ttttttaaaaataaataaatt 207  Q
    |||| ||||||| ||||||||||| ||||||||||| || |||||| | | ||||||||||||||||||||||||||| |||||| | || ||||| |||    
T  231498 tggcaatttctatggtacactcaataaaattgagtgtactggtacatccatatattaaattaatagtttaatgagttattttttttagaaaaaatatatt 231597  T
Q  208 ttctatcagttataatt 224  Q
    ||||||  |||||||||    
T  231598 ttctattggttataatt 231614  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 15264042 - 15264124
Alignment:
Q  109 tggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    |||| ||||||||||| || |||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  15264042 tggcaatttctacggtgcattcaataaa-ttgagtgtaccggtacacctatatattaaattaatagtttaatgtgttatttttt 15264124  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 11489980 - 11489912
Alignment:
Q  124 tacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||||| ||||||||||| ||||||||||  | || |||||| |||||||||||||||||||||||    
T  11489980 tacactcaataaaattgagtgtaccggtacactcatatgttaaatgaatagtttaatgagttatttttt 11489912  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 14054415 - 14054493
Alignment:
Q  114 atttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||| ||||||||||| ||||||||| | || |||| ||| | || |||||| |||||||||||||||||||||||    
T  14054415 atttctatggtacactcaataaaattgagcgtactggtatacccatatgttaaatgaatagtttaatgagttatttttt 14054493  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 36183751 - 36183801
Alignment:
Q  138 ttgagtgcaccggtacacctacatattaaattaatagtttaatgagttatt 188  Q
    ||||||| || |||||||||| ||||||||| |||||||||||||||||||    
T  36183751 ttgagtgtactggtacacctatatattaaatgaatagtttaatgagttatt 36183801  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 10568871 - 10568761
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagttt-aatgagttattttttaaaaataaata-aattttctat 213  Q
    ||||||||||||| ||||| | ||||||||||||||||||| |    ||||||| ||||||| |||||||| |||||| || | |||||  ||||| |||    
T  10568871 ttctacggtacacccaacatatttgagtgcaccggtacaccaaacctttaaatttatagtttaaatgagttgttttttgaagaaaaatattattttttat 10568772  T
Q  214 cagttataatt 224  Q
    || ||||||||    
T  10568771 catttataatt 10568761  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 41609077 - 41609167
Alignment:
Q  101 tatatatatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacata-ttaaattaatagtttaatgagttatttt 190  Q
    |||||||||||| ||||||| ||||||||| | ||  ||||||| |||||||||||    || |||||| ||||||||||||| |||||||    
T  41609077 tatatatatggcaatttctatggtacactcgataattttgagtgtaccggtacacccgtgtatttaaataaatagtttaatgatttatttt 41609167  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 32092107 - 32092163
Alignment:
Q  136 aattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttt 192  Q
    ||||||||| ||||||||||| | || |||||| |||| ||| ||||||||||||||    
T  32092107 aattgagtgtaccggtacacccatatgttaaatgaataatttgatgagttatttttt 32092163  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 90049 - 90133
Alignment:
Q  107 tatggctatttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttatttttta 193  Q
    |||||| ||||||| |||||||||||     ||||||| ||||||||||| | || ||||||| |||||||||||||||||||||||    
T  90049 tatggcgatttctatggtacactcaaatttcttgagtgtaccggtacacc-atat-ttaaattcatagtttaatgagttatttttta 90133  T

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Target: scaffold0432 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 3430 - 3321
Alignment:
Q  116 ttctacggtacactcaacaaaattgagtgcaccggtacacctacatattaaattaatagtttaatgagttattttttaaaaataaata-aattttctatc 214  Q
    ||||| ||||||| ||| | | ||||||| ||| ||||||||||   |||||||||||||| ||| ||||||||||| || | |||||  ||||| ||||    
T  3430 ttctatggtacacccaatatatttgagtgtaccagtacacctactctttaaattaatagttaaataagttattttttgaagaaaaatattattttttatc 3331  T
Q  215 agttataatt 224  Q
    | ||||||||    
T  3330 atttataatt 3321  T

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