View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_low_2 (Length: 457)
Name: NF19094_low_2
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Original strand, 28608432 - 28608860
Alignment:
| Q |
10 |
ataatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaact |
109 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608432 |
ataatactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaact |
28608531 |
T |
|
| Q |
110 |
cgttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagt |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
28608532 |
cgttggacgtgatggtgcacttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagt |
28608631 |
T |
|
| Q |
210 |
attgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcaggaagacatat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28608632 |
attgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcacgaagacatat |
28608731 |
T |
|
| Q |
310 |
acaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608732 |
acaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaa |
28608831 |
T |
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| Q |
410 |
agatatcaacttgaatgtgatgcaaagtg |
438 |
Q |
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|||||| |||||||||||||||||||||| |
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| T |
28608832 |
agatataaacttgaatgtgatgcaaagtg |
28608860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 438
Target Start/End: Complemental strand, 438470 - 438044
Alignment:
| Q |
12 |
aatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcg |
111 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||| ||||||||||||||| ||| |
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| T |
438470 |
aatactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcg |
438371 |
T |
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| Q |
112 |
ttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtat |
211 |
Q |
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||||||||| |||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||||||| ||||||||||||| || |
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| T |
438370 |
ttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcat |
438271 |
T |
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| Q |
212 |
tgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcaggaagacatatac |
311 |
Q |
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| |||| ||||||||| ||| |||||||||||||||||| ||||| |||| ||||||||||||| | |||||||||||||| ||||| |||||| |
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| T |
438270 |
taccaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatac |
438171 |
T |
|
| Q |
312 |
aatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaaag |
411 |
Q |
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|| | | ||| |||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| || ||| | ||||| |
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| T |
438170 |
aactcggctaatgaaaaatgtacaagtttgattctccttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaag |
438071 |
T |
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| Q |
412 |
atatcaacttgaatgtgatgcaaagtg |
438 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
438070 |
atataaacttgaatgtgatgcaaagtg |
438044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 10 - 435
Target Start/End: Original strand, 13659803 - 13660228
Alignment:
| Q |
10 |
ataatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaact |
109 |
Q |
| |
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||||| |||| |||||| ||||||||| |||||| |||||||||||||||| |||||| |||||||||| ||| |||| |||||||||||| ||||||| |
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| T |
13659803 |
ataatgctcgccaggctacaggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaact |
13659902 |
T |
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| Q |
110 |
cgttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagt |
209 |
Q |
| |
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| |||||| ||||||| ||||||| |||||||||| ||||||||| |||| || || | ||||||||||| |||||||| ||||| |||||| |
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| T |
13659903 |
caaaggacgtactggtgcacttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagc |
13660002 |
T |
|
| Q |
210 |
attgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcaggaagacatat |
309 |
Q |
| |
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||| |||||| |||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||||||| || ||||||| |
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| T |
13660003 |
attaataatacatttgaagcacttggagaggcatatgatgctgtcagagtcgaaaccttaaatgttgtgtcatcctattcaaccattcatgaggacatat |
13660102 |
T |
|
| Q |
310 |
acaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaa |
409 |
Q |
| |
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| || | | ||| ||||||| |||||| ||||| | ||||||||||| ||||| ||||| | ||||||| | ||||||||| |||||| | ||| |
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| T |
13660103 |
ataactctgctaatgaaaaacgcacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaa |
13660202 |
T |
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| Q |
410 |
agatatcaacttgaatgtgatgcaaa |
435 |
Q |
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|||||| ||| |||||||||||||| |
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| T |
13660203 |
agatataaaccagaatgtgatgcaaa |
13660228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 12 - 435
Target Start/End: Original strand, 13652305 - 13652728
Alignment:
| Q |
12 |
aatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcg |
111 |
Q |
| |
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|||||||| || ||| |||||||||| | ||||||| | |||||||||||||||||| |||||||||| ||| ||||| ||||||||||| |||||||| |
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| T |
13652305 |
aatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactca |
13652404 |
T |
|
| Q |
112 |
ttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtat |
211 |
Q |
| |
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|||||| |||||| |||||||| |||||||||| |||||||||| ||| || || ||||||||||||| || |||||| ||||| |||||| || |
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| T |
13652405 |
aaggacgtaccggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcat |
13652504 |
T |
|
| Q |
212 |
tgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcaggaagacatatac |
311 |
Q |
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| T |
13652505 |
taataatacatttgaagcatttggagaggcgtacgatgctgttagagtccgaaccttaaatgttgtgtcatcctatgcaaccattcacgaggacatatat |
13652604 |
T |
|
| Q |
312 |
aatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaaag |
411 |
Q |
| |
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|||| || ||| |||||||| |||||| ||||| | ||||||||||| ||||| ||||| | ||||||| | ||||||||| |||||| | ||||| |
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| T |
13652605 |
aattcagctaatgaaaaacacacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaag |
13652704 |
T |
|
| Q |
412 |
atatcaacttgaatgtgatgcaaa |
435 |
Q |
| |
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|||| ||| ||||||||||||||| |
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| T |
13652705 |
atataaacctgaatgtgatgcaaa |
13652728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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