View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_low_4 (Length: 395)
Name: NF19094_low_4
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 35425704 - 35426092
Alignment:
| Q |
1 |
aaagtaagatgttgatttaaatgatcaattttgtttggcttgttgtgcatgacctcttgagattcagcatcacatagttagtgatccttcttgccctagg |
100 |
Q |
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| T |
35425704 |
aaagtaagatgttgatttaaatgatcaattttgtttggcttgttgtgcatgacctcttgagattcagcatcacatagttagtgatccttcttgccctagg |
35425803 |
T |
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| Q |
101 |
tgtgtggaacatc-----------acaccttgcaagattgtccaaaagcaaatgtgaatccgaaagcttttcaattttttgaatactcaagtatttgatc |
189 |
Q |
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| T |
35425804 |
tgtgtggaacatccatggaacttcacaccttgcaagattgtccaaaagcaaatgtgaatccgaaagcttttgaattttttgaatattcaagtatttgatc |
35425903 |
T |
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| Q |
190 |
atgttagttataacttgataaaaattttggtgccttcctattctgtgatgaaattagaaacgtttttactcctctca--nnnnnnnnnggacagataatc |
287 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
35425904 |
atgttagttataacttgattaaaattttggtgccttcctattctgtgatgaaattagaaacgtttttactcctctaatttttttttttggacagataatc |
35426003 |
T |
|
| Q |
288 |
ctctaattttcatcgctaaattacaatatatactaagttgcgaccaaataatccttttgtgttaccattttaaccttttgtatatatag |
376 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35426004 |
ctctaatttttatcgctaaattacaatatatactaagttgcgaccaaataatccttttgtgttaccattttaaccttttgtatagatag |
35426092 |
T |
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