View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19094_low_5 (Length: 394)
Name: NF19094_low_5
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_low_5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 37454106 - 37454499
Alignment:
| Q |
1 |
gaaatggaaaacaaagtcatatgaacatgtaaataaaataccaaaacaaattaaatagaagattggcttccagttaacaacaaaacaattgtatctgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37454106 |
gaaatggaaaacaaagtcatatgaacatgtaaataaaataccaaaacaaattaaatagaagattggcttccagttaacaacaaaacaattgtatctgaac |
37454205 |
T |
|
| Q |
101 |
agaaaaaacaagctcaaccatccctaaaaaagaaaataaatgttgagacttggaacccctgaaaacacattcccaataatggtgtgagtctaacaccgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37454206 |
agaaaaaacaagctcaaccatccctaaaaaagaaaataaatgttgagacttggaacccctgaaaacacattcccaataatggtgtgagtctaacaccgtt |
37454305 |
T |
|
| Q |
201 |
aagaaacccccaaataagagaagagcacagtttcccgcatttatcaccagcgaaggtattacaaatagacaaggtatagttgaagagtaaagcagggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37454306 |
aagaaacccccaaataagagaagagcacagtttcccgcatttatcaccagcgaaggtattacaaatagacaagatatagttgaagagtaaagcagggaat |
37454405 |
T |
|
| Q |
301 |
aactttgaaaggtgagaggaaatgttaaagtaaaaataattggatgctgctgcaataataactaattcagtattccaacatggaaagagaggag |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37454406 |
aactttgaaaggtgagaggaaatgttaaagtaaaaataattggatgctgctgcaataataactaattcagtattccaacatggaaagagaggag |
37454499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 394
Target Start/End: Original strand, 37454517 - 37454560
Alignment:
| Q |
351 |
tgcaataataactaattcagtattccaacatggaaagagaggag |
394 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
37454517 |
tgcaataatgactaattcaatattccaacatggaaagagaggag |
37454560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University