View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_low_6 (Length: 363)
Name: NF19094_low_6
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 22769644 - 22769843
Alignment:
| Q |
7 |
aaaattctcaatacactctttgtggccaatttctcaagtcttctttttaagtgaattttccaagtcaagtcaactactgtagtaatcaacacagctaatg |
106 |
Q |
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| T |
22769644 |
aaaattctcaatacactctttgtggccaatttctcaagtctt---tttaagtgaattttccaagtcaagtcaactactgtagtaatcaacacagctaatg |
22769740 |
T |
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| Q |
107 |
gcaaacgtcactagagaactctgttatacattcatactcacatatttacaccaccnnnnnnntatattcattcatatttctctccttaattaatctgtca |
206 |
Q |
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| T |
22769741 |
gcaaacgtcactagagaattctgtta--------------------tacaccaccaaaaaaatatattcattcatatttctctccttaattaatctgtca |
22769820 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 22769891 - 22769960
Alignment:
| Q |
277 |
gctgcaccagaatgggatacaaaatgtgcagaagaaaaggcttcctgtggatatcttggggaaatctcct |
346 |
Q |
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| T |
22769891 |
gctgcaccagaatgggatacaaaatgtgcaaaagaaaaagtttcctgtggatatcttggggaaatctcct |
22769960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 15528632 - 15528698
Alignment:
| Q |
15 |
caatacactctttgtggccaatttctcaagtcttctttttaagtgaattttccaagtcaagtcaactac |
83 |
Q |
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| T |
15528632 |
caatacactctttctggccaatttcttaagtcttc--tctaagtgaattgtcgaagtcaagtcaactac |
15528698 |
T |
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