View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19094_low_7 (Length: 354)
Name: NF19094_low_7
Description: NF19094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19094_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 21120655 - 21120977
Alignment:
| Q |
20 |
aaaagtaagtggttatagtgttgagtttatgcaaagacgaaacaaatgaaattatccataaattagctaaggttgtttaaacaattttatacaaattata |
119 |
Q |
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| T |
21120655 |
aaaagtaagtggttatagtgttgagtttatgcaaagacgaaacaaatgaaattatccataaattagctaaggttgtttaaacaattttatacaaattata |
21120754 |
T |
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| Q |
120 |
gtgttgagtttctgcaaagacaacaattgaaattgtccataaactagttaagacagttaatttttattttattttaagctaaattagcaaactcaaattg |
219 |
Q |
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| T |
21120755 |
gtgttgagtttctgcaaagacaacaattgaaattgtccataaactagttaagacagttaatttttattttattttaagctaaattagccaacccaaattg |
21120854 |
T |
|
| Q |
220 |
gcattggaaagtagaatctgaaaccttgaggagaagcacactcctaagtccaagctaataccatcatgccaactcaactgggttagctaagattgttaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120855 |
gcattggaaagtagaatctgaaaccttgaggagaagcacactcctaagtccaagctaataccatcatgccaactcaactgggttagctaagattgttaca |
21120954 |
T |
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| Q |
320 |
ttgtcggctagtttctagatatt |
342 |
Q |
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||||||||||||||||||||||| |
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| T |
21120955 |
ttgtcggctagtttctagatatt |
21120977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 40284000 - 40284060
Alignment:
| Q |
242 |
accttgaggagaagcacactcctaagt-ccaagctaataccatcatgccaactcaactggg |
301 |
Q |
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| T |
40284000 |
accttgaggagatgcacactcccaagtcccaagccaataccatcatgccaacccaagtggg |
40284060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 43590966 - 43590906
Alignment:
| Q |
245 |
ttgaggagaagcacactcctaagtcc-aagctaataccatcatgccaactcaactgggtta |
304 |
Q |
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|||||||| |||||||||| |||||| |||| ||||||| || |||||| ||||||||||| |
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| T |
43590966 |
ttgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtta |
43590906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 10338183 - 10338239
Alignment:
| Q |
237 |
ctgaaaccttgaggagaagcacactcctaagt-ccaagctaataccatcatgccaac |
292 |
Q |
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|||| ||||||||||| |||||||||||| || |||||| ||||||| ||||||||| |
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| T |
10338183 |
ctgagaccttgaggaggagcacactcctaggtcccaagccaataccaccatgccaac |
10338239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 23052532 - 23052588
Alignment:
| Q |
237 |
ctgaaaccttgaggagaagcacactcctaagt-ccaagctaataccatcatgccaac |
292 |
Q |
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|||| |||||||||||||||||||||| |||| |||||| ||||||| || |||||| |
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| T |
23052532 |
ctgagaccttgaggagaagcacactcccaagtcccaagccaataccaccaggccaac |
23052588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 52116798 - 52116858
Alignment:
| Q |
245 |
ttgaggagaagcacactcctaagtcc-aagctaataccatcatgccaactcaactgggtta |
304 |
Q |
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|||||||| |||||||||| |||||| |||| ||||||| || |||||| ||||||||||| |
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| T |
52116798 |
ttgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtta |
52116858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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