View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19095_high_10 (Length: 329)
Name: NF19095_high_10
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_high_10 |
 | |
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| [»] scaffold0042 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 14789620 - 14789915
Alignment:
| Q |
15 |
tcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccctta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
14789620 |
tcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatccaccataagtttcctacttggaccttccctta |
14789719 |
T |
|
| Q |
115 |
atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14789720 |
atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgta |
14789819 |
T |
|
| Q |
215 |
aaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
14789820 |
aaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgatggtcttac |
14789915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 14769569 - 14769866
Alignment:
| Q |
13 |
catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccct |
112 |
Q |
| |
|
|||||||||||| || | | ||||||| |||||||||||||||||||||| |||||| || | ||||| |||||||||||||||| |||||||||||| |
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|
| T |
14769569 |
catcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccct |
14769668 |
T |
|
| Q |
113 |
taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| || |
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|
| T |
14769669 |
taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataaaatcaacaggatctttacctgccatatttggatcatattta |
14769768 |
T |
|
| Q |
213 |
taaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttac |
310 |
Q |
| |
|
||||||||||||| || ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
14769769 |
taaaattgtatcactggaatttgaaaacgtaacccttcttggtcatctatgtctgaaagtaattttatttcatgaggtgttggttttgatggtcttac |
14769866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 33 - 310
Target Start/End: Original strand, 14874795 - 14875072
Alignment:
| Q |
33 |
gtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttcccttaatctacctgcaaatggat |
132 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| || | ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
14874795 |
gtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaacctacctgcaaatggat |
14874894 |
T |
|
| Q |
133 |
aataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatcaaacgagt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||| |||| |||||||||||||||| | | | |
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|
| T |
14874895 |
aataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggaacatagttgtaaaattgtatcacaggcat |
14874994 |
T |
|
| Q |
233 |
ttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttac |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14874995 |
ttgataacgtaacccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttac |
14875072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 34 - 301
Target Start/End: Complemental strand, 14757281 - 14757014
Alignment:
| Q |
34 |
taacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttcccttaatctacctgcaaatggata |
133 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| || | ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14757281 |
taacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctacccggaccttcccttaatctacctgcaaatggata |
14757182 |
T |
|
| Q |
134 |
ataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatcaaacgagtt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | || | |
|
|
| T |
14757181 |
ataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatatttataaaattgtatcccaggaact |
14757082 |
T |
|
| Q |
234 |
tgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttga |
301 |
Q |
| |
|
|| |||||||| ||||||||||| || ||||| |||| |||| ||||||||||||| |||||||| |
|
|
| T |
14757081 |
tgccaacgtaatgaatcttggtcatcaatgtctgagagtagttttgtttcatgaggtgtgggttttga |
14757014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 14880061 - 14880349
Alignment:
| Q |
13 |
catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccct |
112 |
Q |
| |
|
|||||||||| | || |||||||||||| |||||||||||||||||||||| |||||| || | ||||| |||||||||||||||| |||||||||||| |
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|
| T |
14880061 |
catcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccct |
14880160 |
T |
|
| Q |
113 |
taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttg |
212 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
14880161 |
taatctacctgcaaatggataataaaatacaagtgtttttgctaatgcttttctaataacatcaacaggatctttccctgccatatttggatcatggtta |
14880260 |
T |
|
| Q |
213 |
taaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttga |
301 |
Q |
| |
|
|| |||||||||||| || ||| |||||||| ||||||||||| || ||||| |||| ||| |||||||| |||| |||||||| |
|
|
| T |
14880261 |
tagaattgtatcaaaggaacttgccaacgtaatgaatcttggtcatcaatgtctgagagtagctttgtttcatgaagtgtgggttttga |
14880349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 36307234 - 36307158
Alignment:
| Q |
18 |
ccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagttt |
94 |
Q |
| |
|
|||||||||||||| || ||||||||||| || ||||| |||| || |||||| |||||||||| ||||| ||||| |
|
|
| T |
36307234 |
ccaaattgttcaagtgttacatcagcatctgcctcaatgaacataacaccttctccattacaatccaccatgagttt |
36307158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 14857656 - 14857359
Alignment:
| Q |
13 |
catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccct |
112 |
Q |
| |
|
|||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
14857656 |
catcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatcattacaatctaccataagcttcctaccaggaccttccct |
14857557 |
T |
|
| Q |
113 |
taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14857556 |
taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatattta |
14857457 |
T |
|
| Q |
213 |
taaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttgagggtcttac |
310 |
Q |
| |
|
|||||||| ||| || ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14857456 |
taaaattggatcgctggaatttgaaaacgtaacccttcttggtcatctatgtctgaaagtaattttatttcatgaggtgcaggttttgatggtcttac |
14857359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 91731 - 92019
Alignment:
| Q |
13 |
catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccataagtttcctactaggaccttccct |
112 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
91731 |
catcaccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggaccttccct |
91830 |
T |
|
| Q |
113 |
taatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttg |
212 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| ||||| || | ||||||||||||| | ||||||||||||| ||| ||||| |||||| ||| ||| |
|
|
| T |
91831 |
caacctacctgccaatggataataaaacacaagcgttttcgcaagggcttttctaataacaacaacagggtctttgccttccataattggattatagttg |
91930 |
T |
|
| Q |
213 |
taaaattgtatcaaacgagtttgataacgtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgttggttttga |
301 |
Q |
| |
|
||||||||||||||| || ||| | ||||| || |||||||||||| ||||| ||| ||||||||||||||| || |||||||| |
|
|
| T |
91931 |
taaaattgtatcaaaggaacatgaaagcgtaaagattgttggtcatctatgtctgagagtcgttttatttcatgaggagtgggttttga |
92019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 292
Target Start/End: Complemental strand, 35368856 - 35368705
Alignment:
| Q |
141 |
acaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcatacttgtaaaattgtatcaaacgagtttgataac |
240 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||| ||||||||||| ||||| |||||||||| || |||||||||||| | || ||| ||| |
|
|
| T |
35368856 |
acaagtgtttttgcaattgcttttctaataacatcaacaaggtctttcccttccataattggatcataattataaaattgtatcccaggaacttgccaac |
35368757 |
T |
|
| Q |
241 |
gtaatccttcttggtcatctatatctgaaagtaattttatttcatgaggtgt |
292 |
Q |
| |
|
||||| ||||| ||||| || | ||| ||| ||||||||||||||||||| |
|
|
| T |
35368756 |
gtaatgaatcttgatcatcaatgtttgagagtgattttatttcatgaggtgt |
35368705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 33003102 - 33003152
Alignment:
| Q |
141 |
acaagtgtttttgctaatgcttttctaataatatcaacagggtctttccct |
191 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
33003102 |
acaagtgtttttgcaattgcttttctaataacatcaacagggtctttccct |
33003152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 47240904 - 47240829
Alignment:
| Q |
13 |
catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccat |
88 |
Q |
| |
|
||||||||||||| ||||| || |||||||| ||||||||||| |||| | ||||||| || ||||||| ||||| |
|
|
| T |
47240904 |
catcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat |
47240829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 47296289 - 47296364
Alignment:
| Q |
13 |
catcaccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatcaaccat |
88 |
Q |
| |
|
||||||||||||| ||||| || |||||||| ||||||||||| |||| | ||||||| || ||||||| ||||| |
|
|
| T |
47296289 |
catcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccat |
47296364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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