View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19095_high_15 (Length: 268)

Name: NF19095_high_15
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19095_high_15
NF19095_high_15
[»] chr5 (18 HSPs)
chr5 (18-240)||(30339521-30339740)
chr5 (18-240)||(30059245-30059464)
chr5 (49-240)||(30748531-30748719)
chr5 (18-241)||(30398952-30399172)
chr5 (52-236)||(30434714-30434895)
chr5 (19-241)||(29852186-29852405)
chr5 (52-240)||(30243402-30243587)
chr5 (50-246)||(30482286-30482479)
chr5 (52-240)||(29871074-29871259)
chr5 (61-240)||(30678210-30678386)
chr5 (50-153)||(4380630-4380733)
chr5 (51-154)||(30205481-30205584)
chr5 (27-137)||(30474363-30474473)
chr5 (54-156)||(30203119-30203221)
chr5 (56-155)||(29709943-29710042)
chr5 (51-90)||(30714463-30714502)
chr5 (186-239)||(30205399-30205452)
chr5 (51-139)||(30429934-30430022)
[»] chr4 (2 HSPs)
chr4 (18-237)||(20297599-20297818)
chr4 (186-239)||(20303720-20303773)
[»] chr7 (1 HSPs)
chr7 (18-240)||(26706220-26706439)
[»] chr1 (3 HSPs)
chr1 (18-139)||(7098401-7098522)
chr1 (18-90)||(7582724-7582796)
chr1 (186-239)||(7582889-7582942)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 30339521 - 30339740
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    |||||||||||||||||  |||||||||    ||||||||||| |||||||||||||||||||||||||||||  ||||  |||  | | ||||||||||    
T  30339521 gtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatgtcttccatctcttaaagacctctatgttgagggatgtaacaat 30339620  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  |||||||   |||||||||||||||||||| |||||||||||    
T  30339621 gagttactgaggtcaatctctaccttccgtggtcttactcagcttatcttatatgaaggtgaagg---aataacatccttcccagaggggatgttcaaaa 30339717  T
Q  218 accttacttctcttcaatctctg 240  Q
    |||||||||||||||||||||||    
T  30339718 accttacttctcttcaatctctg 30339740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 30059464 - 30059245
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    |||||||||||||||||  |||   |||  ||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||    
T  30059464 gtttccttgtctttctaagttggatatctctgaatgccgtaaacttggactgccatgtcttccatctcttaaatccctcactgtatcggaatgtaacaat 30059365  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || || |||   ||||||||   ||||||||||||||||||| |||||||||||    
T  30059364 gagttactgaggtcaatctctaccttccgtggtcttactcagcttttcgtaaatgggggtgaagga---ataacatccttcccagaggggatgttcaaaa 30059268  T
Q  218 accttacttctcttcaatctctg 240  Q
    |||||||||||||||||||||||    
T  30059267 accttacttctcttcaatctctg 30059245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 49 - 240
Target Start/End: Complemental strand, 30748719 - 30748531
Alignment:
Q  49 gattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtg 148  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||  | |||  |||||||||||||||||||||||||||||||||||||||||||    
T  30748719 gattgccctgaacttggactgccatgtcttccatctcttaaatccctccatttatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtg 30748620  T
Q  149 gtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 240  Q
    |||||||| |||||| |||| ||    |||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30748619 gtcttactcagcttaccctaaatagtggtgaagg---aataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatctctg 30748531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 30399172 - 30398952
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    ||||||||||||||||   |||| |||||  | |||||||||||||||| |||||||||||||||||||||||| ||||  |||||  | ||||||||||    
T  30399172 gtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatgtcttccatctcttaaatccctctatgtattgggatgtaacaat 30399073  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||| || || ||  |||   |||||||||||||||||||| |||||||||||    
T  30399072 gagttactgaggtcaatctctaccttccgtggtcttactgagctttccctagattacggtagagg---aataacatccttcccagaggggatgttcaaaa 30398976  T
Q  218 accttacttctcttcaatctctgg 241  Q
    ||||||||||||||||||| ||||    
T  30398975 accttacttctcttcaatcactgg 30398952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 52 - 236
Target Start/End: Complemental strand, 30434895 - 30434714
Alignment:
Q  52 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 151  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| |||  ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  30434895 tgccctaaacttggactgccatgtcttccatctcttaaagacctcggtgtcgatggacgtaacaatgagttactgaggtcaatctctaccttccgtggtc 30434796  T
Q  152 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatc 236  Q
    ||||| |||||| |||| ||    |||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30434795 ttactcagcttaccctaaatagtggtgaagg---aataacatccttaccagaggagatgttcaaaaaccttacttctcttcaatc 30434714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 29852405 - 29852186
Alignment:
Q  19 tttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatg 118  Q
    |||||||||||||||| ||||| ||||    |||||||| |||||||||||||||||||||||||||| ||| | |||  |||||  | |||||||||||    
T  29852405 tttccttgtctttctaatttgaaaatctcatattgccctgaacttggactgccatgtcttccatctctgaaactgctccatgtattgggatgtaacaatg 29852306  T
Q  119 agttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||| ||      | |||||||||||||||||||||||||||||||||    
T  29852305 agttactgaggtcaatctctaccttccgtggtcttacaaagctttggctacatgacggt---ttcagaataacatccttcccagaggagatgttcaaaaa 29852209  T
Q  219 ccttacttctcttcaatctctgg 241  Q
    |||||||||||||||||||||||    
T  29852208 ccttacttctcttcaatctctgg 29852186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 30243402 - 30243587
Alignment:
Q  52 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 151  Q
    |||||||||||||||||||||||||||||||||||||||  ||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30243402 tgccctaaacttggactgccatgtcttccatctcttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 30243501  T
Q  152 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 240  Q
    ||||| ||||||  |||  | || ||   ||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30243502 ttactcagcttaaactaattcacggtttcgg---aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30243587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 30482479 - 30482286
Alignment:
Q  50 attgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtgg 149  Q
    |||||| ||||||||||||||||| ||||||||||||| ||  ||||  |||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  30482479 attgccataaacttggactgccatctcttccatctcttgaaggcctctatgtggatggatgtaacaatgagttactgaggtcaatctctaccttccgtgg 30482380  T
Q  150 tcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctggaagta 246  Q
    ||||||| |||||| ||||   ||  |||||||   |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  30482379 tcttactcagcttaccctaatggagggtgaagg---aataacatccttcccagaggggatgttcaaaaaccttacttgtcttcaatatctggaagta 30482286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 52 - 240
Target Start/End: Complemental strand, 29871259 - 29871074
Alignment:
Q  52 tgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtc 151  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||| ||   ||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  29871259 tgccctaaaattggactgccatgtcttccatctcttaaagacctcgttgccgatccatgtaacaatgagttactgaggtcaatctctaccttttgtggtc 29871160  T
Q  152 ttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 240  Q
    ||||| |||||  ||||  |||| ||||||||   ||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  29871159 ttactcagcttgccctaagtgacggtgaagga---ataacatccttcccagaggggatgttcaaaaaccttacttctcttctatctctg 29871074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 61 - 240
Target Start/End: Original strand, 30678210 - 30678386
Alignment:
Q  61 cttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactaagc 160  Q
    ||||||||||||||||||||||||||||||   ||||   |||  | ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30678210 cttggactgccatgtcttccatctcttaaagaactcgagatatggggatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttactcagc 30678309  T
Q  161 ttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctctg 240  Q
    ||  ||||||| || ||   ||   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30678310 tttccctatataacggtttcgg---aataacatccttcccagaggggatgttcaaaaaccttacttctcttcaatctctg 30678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 4380733 - 4380630
Alignment:
Q  50 attgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtgg 149  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||| |||  | | |||||||||||||||||||||||||||||||||||| |||||    
T  4380733 attgccctaaacttggactgccatgtcatccatctcttaaacacctcgttgttgagggatgtaacaatgagttactgaggtcaatctctacctttcgtgg 4380634  T
Q  150 tctt 153  Q
    ||||    
T  4380633 tctt 4380630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 30205584 - 30205481
Alignment:
Q  51 ttgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggt 150  Q
    ||||||||||||||||||||||||||||  ||||||||||  ||| | |||||  | ||||||||||||||| |||||||||||||||| |||  |||||    
T  30205584 ttgccctaaacttggactgccatgtcttgtatctcttaaaaacctagatgtattgggatgtaacaatgagttgctgaggtcaatctctagcttttgtggt 30205485  T
Q  151 ctta 154  Q
    ||||    
T  30205484 ctta 30205481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 30474473 - 30474363
Alignment:
Q  27 tctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactg 126  Q
    |||||||| |||||| || |||||||||||||||||||   ||||||| |||||||| ||||||  ||||  ||||| || |||||||||||||||||||    
T  30474473 tctttctaatttgaccattattgattgccctaaacttgtgttgccatgccttccatcccttaaagacctcattgtatttggatgtaacaatgagttactg 30474374  T
Q  127 aggtcaatctc 137  Q
    || ||||||||    
T  30474373 agatcaatctc 30474363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 30203221 - 30203119
Alignment:
Q  54 ccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtctt 153  Q
    ||||||||||  |||| |||||||||||| | |||||  |||   |||| |||||||||||||||||||||||||||| ||||||| ||||  |||||||    
T  30203221 ccctaaacttcaactgtcatgtcttccatatgttaaaaacctttatgtaaatgaatgtaacaatgagttactgaggtcgatctctagcttctatggtctt 30203122  T
Q  154 act 156  Q
    |||    
T  30203121 act 30203119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 29709943 - 29710042
Alignment:
Q  56 ctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctctaccttccgtggtcttac 155  Q
    ||||||||| |||| |||||||||| ||||||| |  ||||| ||| |  | ||||||||||||||||||||| |||||||||||||   ||||||||||    
T  29709943 ctaaacttgaactgtcatgtcttccgtctcttatagacctcgatgtttcgggatgtaacaatgagttactgagatcaatctctacctcatgtggtcttac 29710042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 30714463 - 30714502
Alignment:
Q  51 ttgccctaaacttggactgccatgtcttccatctcttaaa 90  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30714463 ttgccctaaacttggactgccatgtcttccatctcttaaa 30714502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 30205452 - 30205399
Alignment:
Q  186 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 239  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||||| ||||    
T  30205452 aataacatccttcccggacgggatgttcaaaaaccttacttgtcttcaagctct 30205399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 30430022 - 30429934
Alignment:
Q  51 ttgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaatgagttactgaggtcaatctcta 139  Q
    ||||| |||||||||  ||||||| ||| ||||| |||||   |||  |||| ||| |||||||||||||||||||  |||||||||||    
T  30430022 ttgccttaaacttgggttgccatgcctttcatcttttaaagaactcattgtagatggatgtaacaatgagttactggagtcaatctcta 30429934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 20297599 - 20297818
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    |||||||||||||||||  |||| ||||    | ||||||||||||||| |||||||||||||||||||||||| ||||| |||  ||  ||||||||||    
T  20297599 gtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgtcttccatctcttaaatccctcgatgtcgatccatgtaacaat 20297698  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||  ||||  |||| |||||| ||||||||||||||||||||| | |||||||||||    
T  20297699 gagttactgagatcaatctctactttccgtggtcttactcagctttccctacttgacagtgaagaaataataacatccttcccagatgggatgttcaaaa 20297798  T
Q  218 accttacttctcttcaatct 237  Q
    ||||||||||||||||||||    
T  20297799 accttacttctcttcaatct 20297818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 20303720 - 20303773
Alignment:
Q  186 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 239  Q
    |||||||||||||| | ||| |||||||| ||||||||||| ||||||| ||||    
T  20303720 aataacatccttccaaaaggggatgttcataaaccttacttgtcttcaaactct 20303773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 26706439 - 26706220
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    ||||||||||||||||  |||||||||     |||||||||| || |||||||||||||||||||||||||||| ||||  ||| |  | ||||||||||    
T  26706439 gtttccttgtctttctcgtttgacaatatactattgccctaagctaggactgccatgtcttccatctcttaaatccctcaatgtttcgggatgtaacaat 26706340  T
Q  118 gagttactgaggtcaatctctaccttccgtggtcttactaagcttatcctatatgaccgtgaaggaataataacatccttcccagaggagatgttcaaaa 217  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||| ||||||| || | |||||   |||||||||||||||||||| |||||||||||    
T  26706339 gagttactgaggtcaatccctacctttcgtggtcttactgagcttaccctatataacggcgaagg---aataacatccttcccagaggggatgttcaaaa 26706243  T
Q  218 accttacttctcttcaatctctg 240  Q
    |||||||||||||||||||||||    
T  26706242 accttacttctcttcaatctctg 26706220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 7098522 - 7098401
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaattcctcgctgtatatgaatgtaacaat 117  Q
    ||||||||||||||||| ||||  ||||    ||||||||||||||| ||| || |||||||||||| ||| |  ||||  |||| |||||||||| |||    
T  7098522 gtttccttgtctttctattttggaaatcgacaattgccctaaacttgaacttccgtgtcttccatctgttagagacctctatgtagatgaatgtaataat 7098423  T
Q  118 gagttactgaggtcaatctcta 139  Q
     || | |||| |||||||||||    
T  7098422 aagatgctgaagtcaatctcta 7098401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 7582724 - 7582796
Alignment:
Q  18 gtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgtcttccatctcttaaa 90  Q
    ||||||||||||||||| |||||  ||||   ||||||||||||||| ||| || |||||||||||| |||||    
T  7582724 gtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgtgtcttccatctgttaaa 7582796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 7582889 - 7582942
Alignment:
Q  186 aataacatccttcccagaggagatgttcaaaaaccttacttctcttcaatctct 239  Q
    |||||||||||||||| ||||||||||   ||||||||||| ||| ||||||||    
T  7582889 aataacatccttcccaaaggagatgtttggaaaccttacttgtctccaatctct 7582942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University