View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19095_high_4 (Length: 668)
Name: NF19095_high_4
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 105 - 652
Target Start/End: Original strand, 30664964 - 30665513
Alignment:
| Q |
105 |
ccaaatttaattaaacattgtacatataacaaaattacacaagaagaaactccaaaaagaaaaataataataaaattatctcaaacttggaatcttttcc |
204 |
Q |
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||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30664964 |
ccaaattaaattaaacattgtacatataacaaaattacataggaagacactccaaaaagaaaaataataataaaattatctcaaacttggaatcttttcc |
30665063 |
T |
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| Q |
205 |
ttccacctaataacacattgagaatgttacaagcacgtgccatcacaacttctagtagttggatcgaagtttgaggcatttgaatcaagaacaagaactt |
304 |
Q |
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| T |
30665064 |
ttccacctaataacacattgagaatgttacaagcacgtgccatcacaacttctagtagttggatcgaagtttgaggcatttgaatcaagaacaagaactt |
30665163 |
T |
|
| Q |
305 |
tgtaatgcctgcacacacaaaa--aacaagccaagattttttagtccaagtttttatttaaaccaaacataatagtaacattaattaaggtagatgcaat |
402 |
Q |
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| T |
30665164 |
tgtaatgcctgcacacaaaaaaaaaacaagccaagattttttagtccaagtttttatttaaaccaaacataatagtaacattaattaaggtagatgcaat |
30665263 |
T |
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| Q |
403 |
tacaaacctccaagatcattggagaaactagaattttccctccttaatagcatcttgattagcatcaccaagagcagcaccttccaaatacttgtctgcc |
502 |
Q |
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| T |
30665264 |
tacaaacctccaagatcattggagaaactagaattttccctccttaatagcatcttgattagcatcaccaagagcagcaccttccaaatacttgtctgcc |
30665363 |
T |
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| Q |
503 |
aattgaactctcttcacattctcttgttctgagacaagcatgttaccatactccaatagcttttctagtgtcatctttggctgctcaaacactggtggtc |
602 |
Q |
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| T |
30665364 |
aattgaactctcttcacattctcttgttctgagacaagcatgttaccatactccaatagcttttctagtgtcatctttggctgctcaaacactggtggtc |
30665463 |
T |
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| Q |
603 |
cttcctttgagttcacaagcttctttccaattgtttcaataccaactcca |
652 |
Q |
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| T |
30665464 |
cgtcctttgagttcacaagcttctttccaattgtttcaataccaactcca |
30665513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 449 - 648
Target Start/End: Original strand, 34434593 - 34434792
Alignment:
| Q |
449 |
atagcatcttgattagcatcaccaagagcagcaccttccaaatacttgtctgccaattgaactctcttcacattctcttgttctgagacaagcatgttac |
548 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
34434593 |
atagcatcttgattagcatcaccaagagcagccccttccaaatacttgtctgccaattgaactctcttcacattttcttgttcttggacaagcatgttac |
34434692 |
T |
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| Q |
549 |
catactccaatagcttttctagtgtcatctttggctgctcaaacactggtggtccttcctttgagttcacaagcttctttccaattgtttcaataccaac |
648 |
Q |
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| T |
34434693 |
catactccaacagtttctccaaactcatcttgggttgatcaaaagttggaggtccttcttttgagttcacaagctttttcccaatggtttcaatgccaac |
34434792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 622
Target Start/End: Original strand, 6852822 - 6852950
Alignment:
| Q |
494 |
ttgtctgccaattgaactctcttcacattctcttgttctgagacaagcatgttaccatactccaatagcttttctagtgtcatctttggctgctcaaaca |
593 |
Q |
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||||| || ||||| || ||||||||||||||||||||| ||||||||| || |||||||| | ||| || || | ||||||||||| |||||||| |
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| T |
6852822 |
ttgtcagctaattggaccctcttcacattctcttgttcttggacaagcatatttccatactctagtagtttgtcaatagtcatctttggttgctcaaaag |
6852921 |
T |
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| Q |
594 |
ctggtggtccttcctttgagttcacaagc |
622 |
Q |
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| T |
6852922 |
ttggaggtccctcttttgaattcacaagc |
6852950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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