View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19095_high_6 (Length: 417)
Name: NF19095_high_6
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 45517438 - 45517837
Alignment:
| Q |
17 |
agcaaccaaccaaccataacacaacaacccaactacgtcgccagtatgtcctaaacaacacttccacttttgacattggttcttgttcttgttcttcaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45517438 |
agcaaccaaccaaccataacacaacaacccaactacgtcgccagtatgtcctaaacaacacttccacttttgacattggttcttgttcttgttcttcaca |
45517537 |
T |
|
| Q |
117 |
atcctgatttgtgcttccttgtaatttcattggagaatatgcttttaataaactttctttgaatagagtctccatttcagatatctacacatatatatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45517538 |
atcctgatttgtgcttccttgtaatttcattggagaatatgcttttaataaactttctttgaatagagtctccatttcagatatctacacatgtatatat |
45517637 |
T |
|
| Q |
217 |
gtcacggacataataattgatagtatacatttttcattaatcattattaacagctagcatatggtaaattctaatgttgaggcggctaaattggagtagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45517638 |
gtcacggacataataattgatagtatacatttttcattaatcattattaacagctagcatatggtaaattctaatgttgaggcggctaaattggagtagt |
45517737 |
T |
|
| Q |
317 |
ac----------tataatataatatatggtacctcaatgtagcctttgtttttgttgtccacagattccattatcaaggctgcatagtcttctgcttcat |
406 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45517738 |
actataatataatataatataatatatggtacctcaatgtagcctttgtttttgttgtccacagattccattatcaaggctgcatagtcttctgcttcat |
45517837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University