View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19095_high_7 (Length: 405)
Name: NF19095_high_7
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 5299543 - 5299922
Alignment:
| Q |
16 |
acatcttccgcactttgatattgctgaaccaaaggctcaagcctgctccaaactccacttgcgtgccatacgttagccgctgtcaaacaatggaagaaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299543 |
acatcttccgcactttgatattgctgaaccaaaggctcaagcctgctccaaactccacttgcgcgccatacgttagccgctgtcaaacaatggaagaaaa |
5299642 |
T |
|
| Q |
116 |
ggtggtagctgttctaaattgcctcattacaaatcacacaagttaagggacatgtgacacctctactgtatctcgaacaaaattatatcgacggaggaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5299643 |
ggtggtagctgttctaaattgcctcattacaaatcatacaagttaagggacatgtgacacctctactgtatctcgaacaaaattatattgacggaggaat |
5299742 |
T |
|
| Q |
216 |
catgtggggtgaaaatagacaataatttcaactaatttgtgacacctctattatactcttttccttgctctacaaatcaacaaaaggaaacaatcatttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299743 |
catgtggggtgaaaatagacaataatttcaactaatttgtgacacctctattatactcttttccttgctctacaaatcaacaaaaggaaacaatcatttg |
5299842 |
T |
|
| Q |
316 |
tatcaatgtattgatagttgcacataccaagtgataactacatttccaaatgacatatcaaagtttagccgcatcctttg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5299843 |
tatcaatgtattgatagttgcacataccaagtgataactacatttccaaatgacatatcaaagtttagccacatcctttg |
5299922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 8860874 - 8860933
Alignment:
| Q |
16 |
acatcttccgcactttgatattgctgaaccaaaggctcaagcctgctccaaactccactt |
75 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8860874 |
acatcctccacactttgatattgctgaaccaaaggctcaagactgctccaaactccactt |
8860933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 20667404 - 20667355
Alignment:
| Q |
264 |
tattatactcttttccttgctctacaaatcaacaaaaggaaacaatcattt |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
20667404 |
tattatactcatttccttgctctacaaatcagc-gaaggaaacaatcattt |
20667355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University