View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19095_low_1 (Length: 911)
Name: NF19095_low_1
Description: NF19095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19095_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 283 - 893
Target Start/End: Original strand, 29564597 - 29565205
Alignment:
| Q |
283 |
aagatatctttgtcaatgtcatgctgtttcacacctattgtcagtcacccattaatcagtcagtg-tccgtgccgtttaaggcaaagcatttga-----g |
376 |
Q |
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| T |
29564597 |
aagatatctttgtcaatgtcatgctgtttcacacctattgtcagtcacccattaatcagtcagtggtccgtgccgtttaaggcaaagcatttgatttgag |
29564696 |
T |
|
| Q |
377 |
attctttatcttcttactacgtacgtactactgccatactcttcatctcttttaatatctacgttagtttctctt-gtttcaaattctaatattagatta |
475 |
Q |
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| T |
29564697 |
attctttatcttcttactacgtacgtactactgccatactcttcatctcttttaatatctacgttagtttctctttgtttcaaattctaatattagatta |
29564796 |
T |
|
| Q |
476 |
tcgttttgtttaaatgcatgcattcatatttttaaatatattaagtcaaggtgaaatgaaattgaatatatattttacgtaactttctatcttgtttgtc |
575 |
Q |
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| T |
29564797 |
tcgttttgtttaaatgcatgcattcatatttttaaatatattaagtcaaggtgaaatgaaattgaatatatattttacgtaactttctatcttgtttgtc |
29564896 |
T |
|
| Q |
576 |
tccctcaagaacaataggactgagattctcttgggtttctcattgtgtcgtccattatac--attgatggcttaattatacgacataaatagctggagca |
673 |
Q |
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| T |
29564897 |
tccctcaagaacaataggactgagattctcttgggtttctcattgt---gtccattatacatattgatggcttaattatacgacataaatagctggagca |
29564993 |
T |
|
| Q |
674 |
agtaatatttggaccaacatgcatgtttaaatatatacacagacacgagacggaacgtgtatcaagaacacaggtgtgcttaattacacttccgatttca |
773 |
Q |
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| T |
29564994 |
agtaatatttggaccaacatgcatgtttaaatatatacacagacacgagacggaacgtgtatcaagaacacaggtgtgcttaattacacttccgatttca |
29565093 |
T |
|
| Q |
774 |
actgcttctttgcttttgtttttagcataagctgtattctcatatgtatggttttgaatttcagcattgattttacttctttctttacttttatatgggt |
873 |
Q |
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| T |
29565094 |
actgcttctttgcttttgtttttagcataa--------ttaagctgtatggttttgaatttcagcattgattttacttctttctttacttttagatgggt |
29565185 |
T |
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| Q |
874 |
gtttcaatttgaattctaac |
893 |
Q |
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| T |
29565186 |
gtttcaatttgaattctaac |
29565205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 29564334 - 29564490
Alignment:
| Q |
55 |
acccaatatgccattcattggtcaaccataaattat-attttaaatttagttaat---cattttcactttatttcattctattttggtttacacttagtt |
150 |
Q |
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| T |
29564334 |
acccaatatgccattcattggtcaaccataaattattattttaaatttagttaataatcattttcactttatttcattctattttggtttacacttagtt |
29564433 |
T |
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| Q |
151 |
ctac-----attattattactccctctgtctcatatttttccaattaatgtgttgaa |
202 |
Q |
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| T |
29564434 |
gtacattatattattattactccctctgtctcatatatttccaattaatgtgttgaa |
29564490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 29564500 - 29564537
Alignment:
| Q |
249 |
tggtataaatgtaaatttagaagtgtttaaatataaga |
286 |
Q |
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| T |
29564500 |
tggtataaatgtaaatttagaagtgtttaaatataaga |
29564537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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